Regulog T-box(Lys) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Lys-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Lys-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 1 | 1 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| oppA |
|
|
|
|
|
|
|
|
*
Lactobacillus plantarum WCFS1 Site: position = -321 score = 58.99 sequence = GATTAAGCGAACGGC... Gene: lp_3686: ABC-type oligopeptide transport system, periplasmic component |
|
|
|
|
|
|
ABC-type oligopeptide transport system, periplasmic component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |