Regulog T-box(Leu) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Leu-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Leu-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| leuS |
*
Oenococcus oeni PSU-1 Site: position = -158 score = 77.38 sequence = ACACAATTAGTAGTA... Gene: OEOE_0839: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus reuteri JCM 1112 Site: position = -270 score = 104.24 sequence = TAAATATTTGATCGT... Gene: LAR_1228: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus helveticus DPC 4571 Site: position = -227 score = 88.85 sequence = AATAAAGGTCAGGAA... Gene: lhv_1726: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus fermentum IFO 3956 Site: position = -275 score = 99.3 sequence = AATATCAGACCGGAA... Gene: LAF_1354: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -279 score = 123.76 sequence = TATGAACGTAGATAA... Gene: LSL_0442: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -239 score = 90.36 sequence = ATAAAGGGCAGGGAC... Gene: LBUL_1451: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus acidophilus NCFM Site: position = -228 score = 88.21 sequence = AATAAAGGTCAGGAA... Gene: LBA1617: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus johnsonii NCC 533 Site: position = -240 score = 85.95 sequence = AAAAATAAAGGCTAG... Gene: LJ0680: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus plantarum WCFS1 Site: position = -348 score = 96.63 sequence = TTACGACTCTGAGAA... Gene: lp_1316: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus casei ATCC 334 Site: position = -238 score = 81.69 sequence = AACGAACAAAGGAGT... Gene: LSEI_0883: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus brevis ATCC 367 Site: position = -271 score = 89.43 sequence = GATCTAAACGTTGAC... Gene: LVIS_1062: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -311 score = 118.25 sequence = TTATTTAACGTTGAG... Gene: LSA1436: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -265 score = 104.35 sequence = AAATATTGTCGATAA... Gene: PEPE_0645: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -298 score = 87.63 sequence = TAGCATTATTGTTCA... Gene: LEUM_0635: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Lactobacillus rhamnosus GG Site: position = -239 score = 92.26 sequence = AACGAACAAAGGAGT... Gene: LGG_00848: Leucyl-tRNA synthetase (EC 6.1.1.4) |
Leucyl-tRNA synthetase (EC 6.1.1.4) |
| CRON 2. | ||||||||||||||||
| oppA |
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Lactobacillus brevis ATCC 367 Site: position = -347 score = 79.73 sequence = CTTAAAAGTGATGAC... Gene: LVIS_0014: ABC-type oligopeptide transport system, periplasmic component |
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ABC-type oligopeptide transport system, periplasmic component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |