Regulog PhnR - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - PhnR
By TF family - GntR/Others
By pathway - Phosphonate utilization
By pathway - 2-aminoethylphosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396	4	4
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
phnS2	* Hahella chejuensis KCTC 2396 Site: position = -51 score = 6.27767 sequence = CTTCTGGTATAGACCAGAAG Gene: HCH_03088: 2-aminoethylphosphonate ABC transporter, periplasmic binding component	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	2-aminoethylphosphonate ABC transporter, periplasmic binding component

CRON 2.
phnR2	* Hahella chejuensis KCTC 2396 Site: position = -28 score = 5.35496 sequence = TTTTTGGAATAGACCAGAAG Gene: HCH_03089: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	2-aminoethylphosphonate uptake and metabolism regulator, GntR family

CRON 3.
COG1409	* Hahella chejuensis KCTC 2396 Site: position = -275 score = 5.039 sequence = AATCTGGTTCGTACCAGTAG Site: position = -196 score = 4.56368 sequence = ATCTTGGTCCGAACCAGATG Gene: HCH_00466: Predicted phosphohydrolase	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Predicted phosphohydrolase

CRON 4.
phnR1	* Hahella chejuensis KCTC 2396 Site: position = -188 score = 4.8586 sequence = CATCTGGTTCGGACCAAGAT Site: position = -109 score = 4.92485 sequence = CTACTGGTACGAACCAGATT Gene: HCH_00465: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	2-aminoethylphosphonate uptake and metabolism regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnR - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --