Statistics of regulated genes

Genome	Genes	Operons
Sinorhizobium meliloti 1021
Rhizobium sp. NGR234
Rhizobium leguminosarum bv. viciae 3841	3	2
Rhizobium etli CFN 42
Agrobacterium tumefaciens str. C58 (Cereon)	3	3
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099
Brucella melitensis 16M
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009	3	1
Bradyrhizobium japonicum USDA 110	3	1
Bradyrhizobium sp. BTAi1	3	1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
vanA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -108 score = 4.89898 sequence = TGTATACA Site: position = -44 score = 4.89898 sequence = TGTATACA Gene: RPA3619: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)	* Bradyrhizobium japonicum USDA 110 Site: position = -99 score = 4.08248 sequence = TGTATACT Site: position = -25 score = 4.89898 sequence = TGTATACA Gene: blr2390: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)	* Bradyrhizobium sp. BTAi1 Site: position = -68 score = 4.89898 sequence = TGTATACA Site: position = -132 score = 4.08248 sequence = TGTATACC Gene: BBta_2184: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanR	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -246 score = 4.89898 sequence = TGTATACA Site: position = -100 score = 4.08248 sequence = GGTATACA Gene: pRL90257: Transcriptional regulator for ferulate or vanillate catabolism, GntR family	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -195 score = 4.08248 sequence = TGAATACA Site: position = -79 score = 4.89898 sequence = TGTATACA Site: position = -279 score = 4.89898 sequence = TGTATACA Gene: Atu1419: Transcriptional regulator for ferulate or vanillate catabolism, GntR family	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3620: Transcriptional regulator for ferulate or vanillate catabolism, GntR family	Bradyrhizobium japonicum USDA 110 Gene: blr2391: Transcriptional regulator for ferulate or vanillate catabolism, GntR family	Bradyrhizobium sp. BTAi1 Gene: BBta_2185: Transcriptional regulator for ferulate or vanillate catabolism, GntR family	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Transcriptional regulator for ferulate or vanillate catabolism, GntR family
vanB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3621: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Bradyrhizobium japonicum USDA 110 Gene: blr2392: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Bradyrhizobium sp. BTAi1 Gene: BBta_2186: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
CRON 2.
metF	Sinorhizobium meliloti 1021 Gene: SMa2143: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -196 score = 4.08248 sequence = TGTATACC Site: position = -50 score = 4.89898 sequence = TGTATACA Gene: pRL90256: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Rhizobium etli CFN 42	*2 Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1764: methylenetetrahydrofolate reductase Site: position = -36 score = 4.89898 sequence = TGTATACA Site: position = -236 score = 4.89898 sequence = TGTATACA Site: position = -120 score = 4.08248 sequence = TGTATTCA Gene: Atu1418: methylenetetrahydrofolate reductase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
gcvT	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90255: vanillate/3-O-methylgallate O-demethylase	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -225 score = 4.08248 sequence = TGAATACA Site: position = -37 score = 4.89898 sequence = TGTATACA Gene: Atu1420: vanillate/3-O-methylgallate O-demethylase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	vanillate/3-O-methylgallate O-demethylase

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