Regulog VanR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | ||
| Rhizobium sp. NGR234 | ||
| Rhizobium leguminosarum bv. viciae 3841 | 3 | 2 |
| Rhizobium etli CFN 42 | ||
| Agrobacterium tumefaciens str. C58 (Cereon) | 3 | 3 |
| Mesorhizobium sp. BNC1 | ||
| Mesorhizobium loti MAFF303099 | ||
| Brucella melitensis 16M | ||
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 3 | 1 |
| Bradyrhizobium japonicum USDA 110 | 3 | 1 |
| Bradyrhizobium sp. BTAi1 | 3 | 1 |
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| vanA |
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Rhodopseudomonas palustris CGA009 Site: position = -108 score = 4.89898 sequence = TGTATACA Site: position = -44 score = 4.89898 sequence = TGTATACA Gene: RPA3619: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Bradyrhizobium japonicum USDA 110 Site: position = -99 score = 4.08248 sequence = TGTATACT Site: position = -25 score = 4.89898 sequence = TGTATACA Gene: blr2390: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Bradyrhizobium sp. BTAi1 Site: position = -68 score = 4.89898 sequence = TGTATACA Site: position = -132 score = 4.08248 sequence = TGTATACC Gene: BBta_2184: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
| vanR |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -246 score = 4.89898 sequence = TGTATACA Site: position = -100 score = 4.08248 sequence = GGTATACA Gene: pRL90257: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -195 score = 4.08248 sequence = TGAATACA Site: position = -79 score = 4.89898 sequence = TGTATACA Site: position = -279 score = 4.89898 sequence = TGTATACA Gene: Atu1419: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
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Gene: RPA3620: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
Gene: blr2391: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
Gene: BBta_2185: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
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Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
| vanB |
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Gene: RPA3621: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: blr2392: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: BBta_2186: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
| CRON 2. | ||||||||||||||||
| metF |
Gene: SMa2143: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -196 score = 4.08248 sequence = TGTATACC Site: position = -50 score = 4.89898 sequence = TGTATACA Gene: pRL90256: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1764: methylenetetrahydrofolate reductase Site: position = -36 score = 4.89898 sequence = TGTATACA Site: position = -236 score = 4.89898 sequence = TGTATACA Site: position = -120 score = 4.08248 sequence = TGTATTCA Gene: Atu1418: methylenetetrahydrofolate reductase |
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| gcvT |
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Gene: pRL90255: vanillate/3-O-methylgallate O-demethylase |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -225 score = 4.08248 sequence = TGAATACA Site: position = -37 score = 4.89898 sequence = TGTATACA Gene: Atu1420: vanillate/3-O-methylgallate O-demethylase |
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vanillate/3-O-methylgallate O-demethylase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |