Regulog T-box(His) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	His-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - His-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956	10	1
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	10	1
Lactobacillus casei ATCC 334	10	1
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG	11	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
hisZ	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	* Lactobacillus fermentum IFO 3956 Site: position = -272 score = 69.36 sequence = AATGAGTAAGGACCA... Gene: LAF_0755: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -408 score = 101.38 sequence = ATAAACGGTTGTGAT... Gene: lp_2561: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	* Lactobacillus casei ATCC 334 Site: position = -382 score = 113.8 sequence = ACATGAAGTTGTGAT... Gene: LSEI_1435: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	* Lactobacillus rhamnosus GG Site: position = -375 score = 99.64 sequence = CCATGAAGTTGTGAT... Gene: LGG_01445: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)
hisG	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0756: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2560: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)	Lactobacillus casei ATCC 334 Gene: LSEI_1434: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01444: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)	ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)
hisD	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0757: Histidinol dehydrogenase (EC 1.1.1.23)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2559: Histidinol dehydrogenase (EC 1.1.1.23)	Lactobacillus casei ATCC 334 Gene: LSEI_1433: Histidinol dehydrogenase (EC 1.1.1.23)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01443: Histidinol dehydrogenase (EC 1.1.1.23)	Histidinol dehydrogenase (EC 1.1.1.23)
LGG_01442	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01442: predicted ORF	predicted ORF
hisB	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0758: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2558: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Lactobacillus casei ATCC 334 Gene: LSEI_1432: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01441: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0759: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2557: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Lactobacillus casei ATCC 334 Gene: LSEI_1431: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01440: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0760: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2556: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Lactobacillus casei ATCC 334 Gene: LSEI_1430: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01439: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisF	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0761: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2554: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Lactobacillus casei ATCC 334 Gene: LSEI_1429: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01438: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0762: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2553: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Lactobacillus casei ATCC 334 Gene: LSEI_1428: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01437: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
hisE	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0763: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2552: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Lactobacillus casei ATCC 334 Gene: LSEI_1427: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01436: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
hisC	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0764: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2551: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Lactobacillus casei ATCC 334 Gene: LSEI_1426: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01435: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(His) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --