Regulog T-box(Gly) - Streptococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Gly-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Streptococcaceae
By RNA motif - T-box
By effector - Gly-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Streptococcus pneumoniae TIGR4	5	1
Streptococcus gallolyticus UCN34	3	1
Streptococcus dysgalactiae subsp. equisimilis GGS_124	3	1
Streptococcus suis 05ZYH33	4	1
Lactococcus lactis subsp. lactis Il1403	3	1
Lactococcus lactis subsp. cremoris SK11	4	1
Streptococcus uberis 0140J	3	1
Streptococcus agalactiae 2603V/R	4	1
Streptococcus sanguinis SK36	4	1
Streptococcus pyogenes M1 GAS	3	1
Streptococcus mutans UA159	3	1
Streptococcus thermophilus CNRZ1066	1	1
Streptococcus gordonii str. Challis substr. CH1	3	1
Streptococcus equi subsp. zooepidemicus MGCS10565	1	1
Streptococcus mitis B6	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
SP_1476	2 Streptococcus pneumoniae TIGR4* Site: position = -215 score = 40.4 sequence = TATAATAGTCAGCAG... Gene: SP_1477: hypothetical protein Gene: SP_1476: hypothetical protein	Streptococcus gallolyticus UCN34	Streptococcus dysgalactiae subsp. equisimilis GGS_124	Streptococcus suis 05ZYH33	Lactococcus lactis subsp. lactis Il1403	Lactococcus lactis subsp. cremoris SK11	Streptococcus uberis 0140J	Streptococcus agalactiae 2603V/R	* Streptococcus sanguinis SK36 Site: position = -228 score = 39.51 sequence = TATAATCTTTTTTAG... Gene: SSA_1881: hypothetical protein	Streptococcus pyogenes M1 GAS	Streptococcus mutans UA159	Streptococcus thermophilus CNRZ1066	Streptococcus gordonii str. Challis substr. CH1	Streptococcus equi subsp. zooepidemicus MGCS10565	Streptococcus mitis B6	hypothetical protein
glyQ	Streptococcus pneumoniae TIGR4 Gene: SP_1475: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus gallolyticus UCN34 Site: position = -268 score = 49.88 sequence = AATACTCTTTAAAGA... Gene: GALLO_0391: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -341 score = 47.4 sequence = CTAAACTAGACTCTA... Gene: SDEG_1746: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Streptococcus suis 05ZYH33 Gene: SSU05_1765: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Lactococcus lactis subsp. lactis Il1403 Site: position = -102 score = 19.94 sequence = ATAAAGGTGGAACCG... Gene: L101560: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Lactococcus lactis subsp. cremoris SK11 Gene: LACR_1196: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus uberis 0140J Site: position = -366 score = 53.56 sequence = TAAAATGGGTTTCAG... Gene: SUB1436: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus agalactiae 2603V/R Site: position = -272 score = 45.33 sequence = TACTGTCTCAGTAAG... Gene: SAG0268: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Streptococcus sanguinis SK36 Gene: SSA_1880: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus pyogenes M1 GAS Site: position = -341 score = 47.4 sequence = CTAAACTAGACTCTA... Gene: SPy1689: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus mutans UA159 Site: position = -415 score = 60.24 sequence = TGTTAAGAAAGAGAG... Gene: SMU.445: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus thermophilus CNRZ1066 Site: position = -233 score = 51.34 sequence = TGATAAGAAAGAAGA... Gene: str0505: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus gordonii str. Challis substr. CH1 Site: position = -255 score = 47.55 sequence = TAATCTTTTTTAGAA... Gene: SGO_0568: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	* Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -356 score = 60.12 sequence = TAAACTAACCAATAG... Gene: Sez_0486: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Streptococcus mitis B6 Gene: smi_1396: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)
glyS	Streptococcus pneumoniae TIGR4 Gene: SP_1474: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus gallolyticus UCN34 Gene: GALLO_0392: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gene: SDEG_1745: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus suis 05ZYH33 Gene: SSU05_1764: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Lactococcus lactis subsp. lactis Il1403 Gene: L0360: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Lactococcus lactis subsp. cremoris SK11 Gene: LACR_1197: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus uberis 0140J Gene: SUB1435: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus agalactiae 2603V/R Gene: SAG0270: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus sanguinis SK36 Gene: SSA_1879: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus pyogenes M1 GAS Gene: SPy1688: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus mutans UA159 Gene: SMU.446: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus thermophilus CNRZ1066 Gene: str0507: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus gordonii str. Challis substr. CH1 Gene: SGO_0569: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus equi subsp. zooepidemicus MGCS10565 Gene: Sez_0487: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Streptococcus mitis B6 Gene: smi_1395: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)
ylaC	Streptococcus pneumoniae TIGR4 Gene: SP_1473: hypothetical protein	Streptococcus gallolyticus UCN34 Gene: GALLO_0393: hypothetical protein	Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gene: SDEG_1744: hypothetical protein	Streptococcus suis 05ZYH33 Gene: SSU05_1763: hypothetical protein	Lactococcus lactis subsp. lactis Il1403 Gene: L104681: hypothetical protein	Lactococcus lactis subsp. cremoris SK11 Gene: LACR_1198: hypothetical protein	Streptococcus uberis 0140J Gene: SUB1434: hypothetical protein	Streptococcus agalactiae 2603V/R Gene: SAG0271: hypothetical protein	Streptococcus sanguinis SK36 Gene: SSA_1878: hypothetical protein	Streptococcus pyogenes M1 GAS Gene: SPy1687: hypothetical protein	Streptococcus mutans UA159 Gene: SMU.447: hypothetical protein	Streptococcus thermophilus CNRZ1066 Gene: str0508: hypothetical protein	Streptococcus gordonii str. Challis substr. CH1 Gene: SGO_0570: hypothetical protein	Streptococcus equi subsp. zooepidemicus MGCS10565	Streptococcus mitis B6 Gene: smi_1394: hypothetical protein	hypothetical protein
SAG0269	Streptococcus pneumoniae TIGR4	Streptococcus gallolyticus UCN34	Streptococcus dysgalactiae subsp. equisimilis GGS_124	Streptococcus suis 05ZYH33	Lactococcus lactis subsp. lactis Il1403	Lactococcus lactis subsp. cremoris SK11	Streptococcus uberis 0140J	Streptococcus agalactiae 2603V/R Gene: SAG0269: FMN-dependent NADH-azoreductase	Streptococcus sanguinis SK36	Streptococcus pyogenes M1 GAS	Streptococcus mutans UA159	Streptococcus thermophilus CNRZ1066	Streptococcus gordonii str. Challis substr. CH1	Streptococcus equi subsp. zooepidemicus MGCS10565	Streptococcus mitis B6	FMN-dependent NADH-azoreductase
SGO_2086	Streptococcus pneumoniae TIGR4	Streptococcus gallolyticus UCN34	Streptococcus dysgalactiae subsp. equisimilis GGS_124	Streptococcus suis 05ZYH33	Lactococcus lactis subsp. lactis Il1403	* Lactococcus lactis subsp. cremoris SK11 Site: position = -109 score = 18.86 sequence = ATAAAGGTGGAACCG... Gene: LACR_1195: hypothetical protein	Streptococcus uberis 0140J	Streptococcus agalactiae 2603V/R	Streptococcus sanguinis SK36	Streptococcus pyogenes M1 GAS	Streptococcus mutans UA159	Streptococcus thermophilus CNRZ1066	Streptococcus gordonii str. Challis substr. CH1	Streptococcus equi subsp. zooepidemicus MGCS10565	Streptococcus mitis B6	Chromosome segregation ATPase
smi_1397	Streptococcus pneumoniae TIGR4	Streptococcus gallolyticus UCN34	Streptococcus dysgalactiae subsp. equisimilis GGS_124	Streptococcus suis 05ZYH33	Lactococcus lactis subsp. lactis Il1403	Lactococcus lactis subsp. cremoris SK11	Streptococcus uberis 0140J	Streptococcus agalactiae 2603V/R	Streptococcus sanguinis SK36	Streptococcus pyogenes M1 GAS	Streptococcus mutans UA159	Streptococcus thermophilus CNRZ1066	Streptococcus gordonii str. Challis substr. CH1	Streptococcus equi subsp. zooepidemicus MGCS10565	* Streptococcus mitis B6 Site: position = -231 score = 42.01 sequence = GTCAGCAGGAAAGAA... Gene: smi_1397: hypothetical protein	hypothetical protein
ycfH	Streptococcus pneumoniae TIGR4	Streptococcus gallolyticus UCN34	Streptococcus dysgalactiae subsp. equisimilis GGS_124	* Streptococcus suis 05ZYH33 Site: position = -198 score = 46.83 sequence = AATACTAAGCATGAA... Gene: SSU05_1766: Phage envelope protein	Lactococcus lactis subsp. lactis Il1403	Lactococcus lactis subsp. cremoris SK11	Streptococcus uberis 0140J	Streptococcus agalactiae 2603V/R	Streptococcus sanguinis SK36	Streptococcus pyogenes M1 GAS	Streptococcus mutans UA159	Streptococcus thermophilus CNRZ1066	Streptococcus gordonii str. Challis substr. CH1	Streptococcus equi subsp. zooepidemicus MGCS10565	Streptococcus mitis B6	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Gly) - Streptococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --