Regulog T-box(Arg) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Arg-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Arg-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus helveticus DPC 4571 | 1 | 1 |
| Lactobacillus fermentum IFO 3956 | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | 1 | 1 |
| Lactobacillus johnsonii NCC 533 | 1 | 1 |
| Lactobacillus plantarum WCFS1 | 1 | 1 |
| Lactobacillus casei ATCC 334 | 1 | 1 |
| Lactobacillus brevis ATCC 367 | 2 | 2 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| argS |
Gene: OEOE_0899: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus reuteri JCM 1112 Site: position = -228 score = 63.09 sequence = ATGAAAATAGGATTT... Gene: LAR_1204: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus helveticus DPC 4571 Site: position = -215 score = 63.6 sequence = CCAGTAAGTTAGAAG... Gene: lhv_1699: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus fermentum IFO 3956 Site: position = -228 score = 59.76 sequence = TAATAAAGGCATTCC... Gene: LAF_1333: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -215 score = 73.25 sequence = ACTATTCTATGATAG... Gene: LSL_0677: Arginyl-tRNA synthetase (EC 6.1.1.19) |
Gene: LBUL_0739: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus acidophilus NCFM Site: position = -216 score = 58.65 sequence = CTAGTAAGTTAAAAG... Gene: LBA1600: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus johnsonii NCC 533 Site: position = -214 score = 76.12 sequence = AAAAGGTTAAAAGTA... Gene: LJ0686: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus plantarum WCFS1 Site: position = -226 score = 82.7 sequence = TACGTCTAATGAGAA... Gene: lp_1391: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus casei ATCC 334 Site: position = -218 score = 43.98 sequence = ATAAGGTTCTGTGAG... Gene: LSEI_1728: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus brevis ATCC 367 Site: position = -273 score = 75.2 sequence = TTCACCATCACTGGA... Gene: LVIS_1491: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -215 score = 66.8 sequence = GAACAGTCAAAAGAA... Gene: LSA1421: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -214 score = 71.32 sequence = ATTAGTAGGGTAGTA... Gene: PEPE_0669: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -300 score = 51.15 sequence = GTAAAAGACGAAGAT... Gene: LEUM_1215: Arginyl-tRNA synthetase (EC 6.1.1.19) |
*
Lactobacillus rhamnosus GG Site: position = -216 score = 47.45 sequence = TATAGATCCGGTGAG... Gene: LGG_01786: Arginyl-tRNA synthetase (EC 6.1.1.19) |
Arginyl-tRNA synthetase (EC 6.1.1.19) |
| CRON 2. | ||||||||||||||||
| oppA |
|
|
|
|
|
|
|
|
|
|
*
Lactobacillus brevis ATCC 367 Site: position = -276 score = 100.98 sequence = AAACGACGTTGCCCA... Gene: LVIS_0024: ABC-type oligopeptide transport system, periplasmic component |
|
|
|
|
ABC-type oligopeptide transport system, periplasmic component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |