Regulog T-box(Arg) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Arg-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Arg-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112	1	1
Lactobacillus helveticus DPC 4571	1	1
Lactobacillus fermentum IFO 3956	1	1
Lactobacillus salivarius subsp. salivarius UCC118	1	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM	1	1
Lactobacillus johnsonii NCC 533	1	1
Lactobacillus plantarum WCFS1	1	1
Lactobacillus casei ATCC 334	1	1
Lactobacillus brevis ATCC 367	2	2
Lactobacillus sakei subsp. sakei 23K	1	1
Pediococcus pentosaceus ATCC 25745	1	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1	1
Lactobacillus rhamnosus GG	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
argS	Oenococcus oeni PSU-1 Gene: OEOE_0899: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus reuteri JCM 1112 Site: position = -228 score = 63.09 sequence = ATGAAAATAGGATTT... Gene: LAR_1204: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus helveticus DPC 4571 Site: position = -215 score = 63.6 sequence = CCAGTAAGTTAGAAG... Gene: lhv_1699: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus fermentum IFO 3956 Site: position = -228 score = 59.76 sequence = TAATAAAGGCATTCC... Gene: LAF_1333: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -215 score = 73.25 sequence = ACTATTCTATGATAG... Gene: LSL_0677: Arginyl-tRNA synthetase (EC 6.1.1.19)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0739: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus acidophilus NCFM Site: position = -216 score = 58.65 sequence = CTAGTAAGTTAAAAG... Gene: LBA1600: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus johnsonii NCC 533 Site: position = -214 score = 76.12 sequence = AAAAGGTTAAAAGTA... Gene: LJ0686: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus plantarum WCFS1 Site: position = -226 score = 82.7 sequence = TACGTCTAATGAGAA... Gene: lp_1391: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus casei ATCC 334 Site: position = -218 score = 43.98 sequence = ATAAGGTTCTGTGAG... Gene: LSEI_1728: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus brevis ATCC 367 Site: position = -273 score = 75.2 sequence = TTCACCATCACTGGA... Gene: LVIS_1491: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus sakei subsp. sakei 23K Site: position = -215 score = 66.8 sequence = GAACAGTCAAAAGAA... Gene: LSA1421: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Pediococcus pentosaceus ATCC 25745 Site: position = -214 score = 71.32 sequence = ATTAGTAGGGTAGTA... Gene: PEPE_0669: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -300 score = 51.15 sequence = GTAAAAGACGAAGAT... Gene: LEUM_1215: Arginyl-tRNA synthetase (EC 6.1.1.19)	* Lactobacillus rhamnosus GG Site: position = -216 score = 47.45 sequence = TATAGATCCGGTGAG... Gene: LGG_01786: Arginyl-tRNA synthetase (EC 6.1.1.19)	Arginyl-tRNA synthetase (EC 6.1.1.19)

CRON 2.
oppA	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	* Lactobacillus brevis ATCC 367 Site: position = -276 score = 100.98 sequence = AAACGACGTTGCCCA... Gene: LVIS_0024: ABC-type oligopeptide transport system, periplasmic component	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	ABC-type oligopeptide transport system, periplasmic component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Arg) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --