Regulog T-box(Asp) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Asp-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Asp-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112	2	2
Lactobacillus helveticus DPC 4571	2	1
Lactobacillus fermentum IFO 3956	2	1
Lactobacillus salivarius subsp. salivarius UCC118	2	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2	1
Lactobacillus acidophilus NCFM	2	1
Lactobacillus johnsonii NCC 533	6	2
Lactobacillus plantarum WCFS1	2	1
Lactobacillus casei ATCC 334	2	1
Lactobacillus brevis ATCC 367	2	1
Lactobacillus sakei subsp. sakei 23K	2	1
Pediococcus pentosaceus ATCC 25745	2	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2	1
Lactobacillus rhamnosus GG	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
hisS	Oenococcus oeni PSU-1 Gene: OEOE_0589: Histidyl-tRNA synthetase (EC 6.1.1.21)	2 Lactobacillus reuteri JCM 1112* Site: position = -281 score = 67.78 sequence = TATAAAAGCATTGAC... Gene: LAR_1731: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: LAR_1715: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus helveticus DPC 4571 Site: position = -236 score = 37.42 sequence = AATTATCGATGACAA... Gene: lhv_1013: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus fermentum IFO 3956 Site: position = -221 score = 51.95 sequence = GACTGTCAATGAAAA... Gene: LAF_0832: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -243 score = 76.3 sequence = TAAAGCCGAATGAAA... Gene: LSL_0852: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -230 score = 37.78 sequence = AATTATCAATGACAA... Gene: LBUL_0812: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus acidophilus NCFM Site: position = -236 score = 37.8 sequence = AATTATCGATGACGA... Gene: LBA0935: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus johnsonii NCC 533 Site: position = -222 score = 40.28 sequence = GGAATTATCGATGAC... Gene: LJ1392: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus plantarum WCFS1 Site: position = -238 score = 47.99 sequence = CAATCGACCGCAGAG... Gene: lp_1981: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus casei ATCC 334 Site: position = -361 score = 50.9 sequence = ACTAAGACCTGTGAC... Gene: LSEI_1527: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus brevis ATCC 367 Site: position = -238 score = 63.9 sequence = GATTGCCAAAGAGAA... Gene: LVIS_0735: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus sakei subsp. sakei 23K Site: position = -227 score = 52.21 sequence = GATGACCAGTGATAA... Gene: LSA0863: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Pediococcus pentosaceus ATCC 25745 Site: position = -223 score = 84.85 sequence = ATATAAATCGATGAA... Gene: PEPE_1116: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -363 score = 74.3 sequence = ATTAGAACCGATGAA... Gene: LEUM_1310: Histidyl-tRNA synthetase (EC 6.1.1.21)	* Lactobacillus rhamnosus GG Site: position = -438 score = 47.09 sequence = ACTAAGACCTGTGAC... Gene: LGG_01562: Histidyl-tRNA synthetase (EC 6.1.1.21)	Histidyl-tRNA synthetase (EC 6.1.1.21)
aspS	Oenococcus oeni PSU-1 Gene: OEOE_0590: Aspartyl-tRNA synthetase (EC 6.1.1.12)	* Lactobacillus reuteri JCM 1112 Site: position = -233 score = 50.56 sequence = AATAGCTGTTGATAA... Gene: LAR_0695: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus helveticus DPC 4571 Gene: lhv_1014: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus fermentum IFO 3956 Gene: LAF_0833: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0853: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0813: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus acidophilus NCFM Gene: LBA0936: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus johnsonii NCC 533 Gene: LJ1391: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus plantarum WCFS1 Gene: lp_1980: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus casei ATCC 334 Gene: LSEI_1526: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus brevis ATCC 367 Gene: LVIS_0736: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0864: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1115: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1309: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Lactobacillus rhamnosus GG Gene: LGG_01561: Aspartyl-tRNA synthetase (EC 6.1.1.12)	Aspartyl-tRNA synthetase (EC 6.1.1.12)

CRON 2.
glnQ	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	* Lactobacillus johnsonii NCC 533 Site: position = -386 score = 84.74 sequence = AAAAAGCGATAAAAA... Gene: LJ0753: ABC-type polar amino acid transport system, ATPase component	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	ABC-type polar amino acid transport system, ATPase component
glnH	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533 Gene: LJ0754: glutamine ABC transporter solute-binding component	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	glutamine ABC transporter solute-binding component
glnM	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533 Gene: LJ0755: glutamine ABC transporter permease component	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	ABC-type amino acid transport system, permease component
glnP	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533 Gene: LJ0756: glutamine ABC transporter permease component	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	ABC-type amino acid transport system, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Asp) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --