Regulog T-box(Asp) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Asp-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Asp-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 2 | 2 |
| Lactobacillus helveticus DPC 4571 | 2 | 1 |
| Lactobacillus fermentum IFO 3956 | 2 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 2 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 2 | 1 |
| Lactobacillus acidophilus NCFM | 2 | 1 |
| Lactobacillus johnsonii NCC 533 | 6 | 2 |
| Lactobacillus plantarum WCFS1 | 2 | 1 |
| Lactobacillus casei ATCC 334 | 2 | 1 |
| Lactobacillus brevis ATCC 367 | 2 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 2 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 2 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 2 | 1 |
| Lactobacillus rhamnosus GG | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| hisS |
Gene: OEOE_0589: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*2
Lactobacillus reuteri JCM 1112 Site: position = -281 score = 67.78 sequence = TATAAAAGCATTGAC... Gene: LAR_1731: Histidyl-tRNA synthetase (EC 6.1.1.21) Gene: LAR_1715: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus helveticus DPC 4571 Site: position = -236 score = 37.42 sequence = AATTATCGATGACAA... Gene: lhv_1013: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus fermentum IFO 3956 Site: position = -221 score = 51.95 sequence = GACTGTCAATGAAAA... Gene: LAF_0832: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -243 score = 76.3 sequence = TAAAGCCGAATGAAA... Gene: LSL_0852: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -230 score = 37.78 sequence = AATTATCAATGACAA... Gene: LBUL_0812: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus acidophilus NCFM Site: position = -236 score = 37.8 sequence = AATTATCGATGACGA... Gene: LBA0935: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus johnsonii NCC 533 Site: position = -222 score = 40.28 sequence = GGAATTATCGATGAC... Gene: LJ1392: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus plantarum WCFS1 Site: position = -238 score = 47.99 sequence = CAATCGACCGCAGAG... Gene: lp_1981: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus casei ATCC 334 Site: position = -361 score = 50.9 sequence = ACTAAGACCTGTGAC... Gene: LSEI_1527: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus brevis ATCC 367 Site: position = -238 score = 63.9 sequence = GATTGCCAAAGAGAA... Gene: LVIS_0735: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -227 score = 52.21 sequence = GATGACCAGTGATAA... Gene: LSA0863: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -223 score = 84.85 sequence = ATATAAATCGATGAA... Gene: PEPE_1116: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -363 score = 74.3 sequence = ATTAGAACCGATGAA... Gene: LEUM_1310: Histidyl-tRNA synthetase (EC 6.1.1.21) |
*
Lactobacillus rhamnosus GG Site: position = -438 score = 47.09 sequence = ACTAAGACCTGTGAC... Gene: LGG_01562: Histidyl-tRNA synthetase (EC 6.1.1.21) |
Histidyl-tRNA synthetase (EC 6.1.1.21) |
| aspS |
Gene: OEOE_0590: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
*
Lactobacillus reuteri JCM 1112 Site: position = -233 score = 50.56 sequence = AATAGCTGTTGATAA... Gene: LAR_0695: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: lhv_1014: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LAF_0833: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LSL_0853: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LBUL_0813: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LBA0936: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LJ1391: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: lp_1980: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LSEI_1526: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LVIS_0736: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LSA0864: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: PEPE_1115: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LEUM_1309: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Gene: LGG_01561: Aspartyl-tRNA synthetase (EC 6.1.1.12) |
Aspartyl-tRNA synthetase (EC 6.1.1.12) |
| CRON 2. | ||||||||||||||||
| glnQ |
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*
Lactobacillus johnsonii NCC 533 Site: position = -386 score = 84.74 sequence = AAAAAGCGATAAAAA... Gene: LJ0753: ABC-type polar amino acid transport system, ATPase component |
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ABC-type polar amino acid transport system, ATPase component |
| glnH |
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Gene: LJ0754: glutamine ABC transporter solute-binding component |
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glutamine ABC transporter solute-binding component |
| glnM |
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Gene: LJ0755: glutamine ABC transporter permease component |
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ABC-type amino acid transport system, permease component |
| glnP |
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Gene: LJ0756: glutamine ABC transporter permease component |
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ABC-type amino acid transport system, permease component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |