Regulog T-box(Asn) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Asn-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Asn-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112	2	1
Lactobacillus helveticus DPC 4571	5	2
Lactobacillus fermentum IFO 3956	1	1
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2	1
Lactobacillus acidophilus NCFM	5	2
Lactobacillus johnsonii NCC 533	1	1
Lactobacillus plantarum WCFS1	2	1
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367	2	2
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745	2	2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
asnA	Oenococcus oeni PSU-1	* Lactobacillus reuteri JCM 1112 Site: position = -308 score = 123.03 sequence = GAAAAGCGATGAGAA... Gene: LAR_1767: Aspartate--ammonia ligase (EC 6.3.1.1)	* Lactobacillus helveticus DPC 4571 Site: position = -310 score = 116.33 sequence = AAAAAGCTATGAAAA... Gene: lhv_2034: Aspartate--ammonia ligase (EC 6.3.1.1)	Lactobacillus fermentum IFO 3956 Gene: LAF_1602: Aspartate--ammonia ligase (EC 6.3.1.1)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1033: Aspartate--ammonia ligase (EC 6.3.1.1)	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -303 score = 91.69 sequence = GTCAAAAGATGAGAA... Gene: LBUL_1110: Aspartate--ammonia ligase (EC 6.3.1.1)	* Lactobacillus acidophilus NCFM Site: position = -310 score = 116.83 sequence = AAAAAGCTATGAAAA... Gene: LBA1896: Aspartate--ammonia ligase (EC 6.3.1.1)	* Lactobacillus johnsonii NCC 533 Site: position = -302 score = 98.19 sequence = AAAAAGCAATGAAGA... Gene: LJ0511: Aspartate--ammonia ligase (EC 6.3.1.1)	* Lactobacillus plantarum WCFS1 Site: position = -330 score = 91.07 sequence = ATAAAAAACGGAGGA... Gene: lp_0957: Aspartate--ammonia ligase (EC 6.3.1.1)	Lactobacillus casei ATCC 334	* Lactobacillus brevis ATCC 367 Site: position = -308 score = 82.99 sequence = AAAAAACGGAGGAAA... Gene: LVIS_1649: Aspartate--ammonia ligase (EC 6.3.1.1)	Lactobacillus sakei subsp. sakei 23K	* Pediococcus pentosaceus ATCC 25745 Site: position = -309 score = 88.14 sequence = TGAAGACAAAAAGAG... Gene: PEPE_1469: Aspartate--ammonia ligase (EC 6.3.1.1)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Aspartate--ammonia ligase (EC 6.3.1.1)
asnS	Oenococcus oeni PSU-1 Gene: OEOE_1097: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus reuteri JCM 1112 Gene: LAR_1768: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus helveticus DPC 4571 Gene: lhv_1270: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus fermentum IFO 3956 Gene: LAF_1189: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0689: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	2 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1111: Asparaginyl-tRNA synthetase (EC 6.1.1.22) Gene: LBUL_0911: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus acidophilus NCFM Gene: LBA1162: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus johnsonii NCC 533 Gene: LJ1200: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	2 Lactobacillus plantarum WCFS1 Gene: lp_0956: Asparaginyl-tRNA synthetase (EC 6.1.1.22) Gene: lp_1740: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus casei ATCC 334 Gene: LSEI_1485: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K Gene: LSA0914: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1381: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus rhamnosus GG Gene: LGG_01491: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Asparaginyl-tRNA synthetase (EC 6.1.1.22)

CRON 2.
asnS2	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	* Lactobacillus brevis ATCC 367 Site: position = -303 score = 70.95 sequence = ACAAAAACAAGAGAA... Gene: LVIS_2017: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Lactobacillus sakei subsp. sakei 23K	* Pediococcus pentosaceus ATCC 25745 Site: position = -302 score = 103.3 sequence = TATCAACCGTAAGAA... Gene: PEPE_0547: Asparaginyl-tRNA synthetase (EC 6.1.1.22)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Asparaginyl-tRNA synthetase (EC 6.1.1.22)

CRON 3.
asnB	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	* Lactobacillus fermentum IFO 3956 Site: position = -314 score = 110.33 sequence = TAAGAGAAAAATGAG... Gene: LAF_0646: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)

CRON 4.
glnQ	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	* Lactobacillus helveticus DPC 4571 Site: position = -496 score = 104.9 sequence = AAAAGGCTATGAAAA... Gene: lhv_0598: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus acidophilus NCFM Site: position = -478 score = 113.36 sequence = AAAAAGCGATGAAAA... Gene: LBA0578: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
glnH	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571 Gene: lhv_0599: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM Gene: LBA0579: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
glnM	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571 Gene: lhv_0600: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM Gene: LBA0581: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
glnP	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571 Gene: lhv_0601: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM Gene: LBA0582: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Asn) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --