Regulog T-box(Asn) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Asn-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Asn-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 2 | 1 |
| Lactobacillus helveticus DPC 4571 | 5 | 2 |
| Lactobacillus fermentum IFO 3956 | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 2 | 1 |
| Lactobacillus acidophilus NCFM | 5 | 2 |
| Lactobacillus johnsonii NCC 533 | 1 | 1 |
| Lactobacillus plantarum WCFS1 | 2 | 1 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | 2 | 2 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | 2 | 2 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| asnA |
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Lactobacillus reuteri JCM 1112 Site: position = -308 score = 123.03 sequence = GAAAAGCGATGAGAA... Gene: LAR_1767: Aspartate--ammonia ligase (EC 6.3.1.1) |
*
Lactobacillus helveticus DPC 4571 Site: position = -310 score = 116.33 sequence = AAAAAGCTATGAAAA... Gene: lhv_2034: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: LAF_1602: Aspartate--ammonia ligase (EC 6.3.1.1) |
Gene: LSL_1033: Aspartate--ammonia ligase (EC 6.3.1.1) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -303 score = 91.69 sequence = GTCAAAAGATGAGAA... Gene: LBUL_1110: Aspartate--ammonia ligase (EC 6.3.1.1) |
*
Lactobacillus acidophilus NCFM Site: position = -310 score = 116.83 sequence = AAAAAGCTATGAAAA... Gene: LBA1896: Aspartate--ammonia ligase (EC 6.3.1.1) |
*
Lactobacillus johnsonii NCC 533 Site: position = -302 score = 98.19 sequence = AAAAAGCAATGAAGA... Gene: LJ0511: Aspartate--ammonia ligase (EC 6.3.1.1) |
*
Lactobacillus plantarum WCFS1 Site: position = -330 score = 91.07 sequence = ATAAAAAACGGAGGA... Gene: lp_0957: Aspartate--ammonia ligase (EC 6.3.1.1) |
|
*
Lactobacillus brevis ATCC 367 Site: position = -308 score = 82.99 sequence = AAAAAACGGAGGAAA... Gene: LVIS_1649: Aspartate--ammonia ligase (EC 6.3.1.1) |
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -309 score = 88.14 sequence = TGAAGACAAAAAGAG... Gene: PEPE_1469: Aspartate--ammonia ligase (EC 6.3.1.1) |
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Aspartate--ammonia ligase (EC 6.3.1.1) |
| asnS |
Gene: OEOE_1097: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LAR_1768: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: lhv_1270: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LAF_1189: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LSL_0689: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1111: Asparaginyl-tRNA synthetase (EC 6.1.1.22) Gene: LBUL_0911: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LBA1162: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LJ1200: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
2
Lactobacillus plantarum WCFS1 Gene: lp_0956: Asparaginyl-tRNA synthetase (EC 6.1.1.22) Gene: lp_1740: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LSEI_1485: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Gene: LSA0914: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Gene: LEUM_1381: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Gene: LGG_01491: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
| CRON 2. | ||||||||||||||||
| asnS2 |
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Lactobacillus brevis ATCC 367 Site: position = -303 score = 70.95 sequence = ACAAAAACAAGAGAA... Gene: LVIS_2017: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -302 score = 103.3 sequence = TATCAACCGTAAGAA... Gene: PEPE_0547: Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
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Asparaginyl-tRNA synthetase (EC 6.1.1.22) |
| CRON 3. | ||||||||||||||||
| asnB |
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*
Lactobacillus fermentum IFO 3956 Site: position = -314 score = 110.33 sequence = TAAGAGAAAAATGAG... Gene: LAF_0646: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) |
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Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) |
| CRON 4. | ||||||||||||||||
| glnQ |
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*
Lactobacillus helveticus DPC 4571 Site: position = -496 score = 104.9 sequence = AAAAGGCTATGAAAA... Gene: lhv_0598: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) |
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*
Lactobacillus acidophilus NCFM Site: position = -478 score = 113.36 sequence = AAAAAGCGATGAAAA... Gene: LBA0578: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) |
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Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) |
| glnH |
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Gene: lhv_0599: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) |
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Gene: LBA0579: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) |
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Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) |
| glnM |
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Gene: lhv_0600: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
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Gene: LBA0581: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
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Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
| glnP |
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Gene: lhv_0601: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
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Gene: LBA0582: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
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Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |