Regulog T-box(Ala) - Streptococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ala-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Streptococcaceae
- By RNA motif - T-box
- By effector - Ala-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| COG4894 |
*
Streptococcus pneumoniae TIGR4 Site: position = -188 score = 54.7 sequence = TAAGAAAGTTGAGAA... Gene: SP_1384: hypothetical protein |
|
*
Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -216 score = 49.83 sequence = TAATTTAGTTAAGAA... Gene: SDEG_1431: hypothetical protein |
*
Streptococcus suis 05ZYH33 Site: position = -245 score = 49.94 sequence = TTTACTTATTAAGAA... Gene: SSU05_1237: hypothetical protein |
|
|
|
*
Streptococcus agalactiae 2603V/R Site: position = -210 score = 45.55 sequence = ATACTATTGAGAATG... Gene: SAG0809: hypothetical protein |
*
Streptococcus sanguinis SK36 Site: position = -204 score = 51.87 sequence = AGACTGGTGAGAATT... Gene: SSA_0755: hypothetical protein |
|
*
Streptococcus mutans UA159 Site: position = -199 score = 52.13 sequence = TAATTATCCTGTCAA... Gene: SMU.649: hypothetical protein |
|
*
Streptococcus gordonii str. Challis substr. CH1 Site: position = -200 score = 53.63 sequence = ATGAAATGGTGAGAA... Gene: SGO_1571: hypothetical protein |
|
*
Streptococcus mitis B6 Site: position = -198 score = 57.37 sequence = AGAAAGTTGAGAATT... Gene: smi_0748: hypothetical protein |
hypothetical protein |
| alaS |
Gene: SP_1383: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Streptococcus gallolyticus UCN34 Site: position = -339 score = 50.5 sequence = CAATTAAAAGGATTG... Gene: GALLO_0674: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: SDEG_1430: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: SSU05_1236: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Lactococcus lactis subsp. lactis Il1403 Site: position = -208 score = 28.56 sequence = AAAAAAAGTGCTTAT... Gene: L0343: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Lactococcus lactis subsp. cremoris SK11 Site: position = -208 score = 31.29 sequence = GATAAAAGTGCTTAT... Gene: LACR_1887: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Streptococcus uberis 0140J Site: position = -253 score = 41.86 sequence = TAAGTTAGTTAAGAA... Gene: SUB1230: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: SAG0810: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: SSA_0756: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Streptococcus pyogenes M1 GAS Site: position = -347 score = 52.55 sequence = TAATTTAGTTAAGAA... Gene: SPy1389: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: SMU.650: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Streptococcus thermophilus CNRZ1066 Site: position = -237 score = 48.14 sequence = TTCCCTTTGAGAAAG... Gene: str0457: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: SGO_1570: Alanyl-tRNA synthetase (EC 6.1.1.7) |
*
Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -318 score = 43.03 sequence = GTTTAGTTAAGAATT... Gene: Sez_0667: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: smi_0749: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Alanyl-tRNA synthetase (EC 6.1.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |