Regulog T-box(Ala) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ala-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Ala-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| LGG_00766 |
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Lactobacillus rhamnosus GG Site: position = -138 score = 36.94 sequence = GAAAAGCTATAATTG... Gene: LGG_00766: predicted ORF |
predicted ORF |
| alaS |
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Oenococcus oeni PSU-1 Site: position = -195 score = 61.54 sequence = GAATAGAAAACGGAT... Gene: OEOE_1167: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus reuteri JCM 1112 Site: position = -233 score = 43.14 sequence = AATATGACACGTCTG... Gene: LAR_0519: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus helveticus DPC 4571 Site: position = -209 score = 56.23 sequence = TTCAGCTTAAGATAT... Gene: lhv_0438: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus fermentum IFO 3956 Site: position = -224 score = 44.78 sequence = ACACATCTGGGACAT... Gene: LAF_0521: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -242 score = 64.92 sequence = TACTTTGACTTGAAT... Gene: LSL_1111: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -213 score = 49.44 sequence = AGAGACGCTTAAGAT... Gene: LBUL_1486: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus acidophilus NCFM Site: position = -213 score = 55.33 sequence = TTCAGCTTAAGATAT... Gene: LBA0417: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus johnsonii NCC 533 Site: position = -211 score = 62.14 sequence = GCACGTTTAGGACAT... Gene: LJ0474: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus plantarum WCFS1 Site: position = -262 score = 60.16 sequence = TTTCTATACTTTGCA... Gene: lp_2277: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus casei ATCC 334 Site: position = -377 score = 32.53 sequence = GAAAAGCTATAATGA... Gene: LSEI_0784: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus brevis ATCC 367 Site: position = -237 score = 54.88 sequence = TATTTCAATAATATA... Gene: LVIS_1223: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -190 score = 32.42 sequence = TCATTAGAACGACAG... Gene: LSA0387: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -228 score = 62.76 sequence = AAAATCATTTGAGAT... Gene: PEPE_1263: Alanyl-tRNA synthetase (EC 6.1.1.7) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -249 score = 52.04 sequence = TAATGATTAGGAATT... Gene: LEUM_0556: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Gene: LGG_00767: Alanyl-tRNA synthetase (EC 6.1.1.7) |
Alanyl-tRNA synthetase (EC 6.1.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |