Regulog SAM - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | 1 | 1 |
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| metK |
*
Oenococcus oeni PSU-1 Site: position = -144 score = 32.36 sequence = ACCTATTCAGAGCGT... Gene: OEOE_0838: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LAR_1229: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: lhv_1731: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LAF_1358: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LSL_0441: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LBUL_1455: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LBA1622: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LJ0677: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: lp_1301: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LSEI_0877: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LVIS_1523: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LSA0468: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: PEPE_0641: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -231 score = 35.53 sequence = ACAGCTATCAAGAGT... Gene: LEUM_1697: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LGG_00842: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |