Regulog Purine - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | Purine |
| RFAM: | RF00167 |
| Regulation mode: | |
| Biological process: | Purine metabolism |
| Effector: | Adenine; Guanine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - Purine
- By effector - Adenine
- By effector - Guanine
- By pathway - Purine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | 3 | 2 |
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus helveticus DPC 4571 | 3 | 2 |
| Lactobacillus fermentum IFO 3956 | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 2 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 2 | 1 |
| Lactobacillus acidophilus NCFM | 4 | 2 |
| Lactobacillus johnsonii NCC 533 | 3 | 2 |
| Lactobacillus plantarum WCFS1 | 2 | 2 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | 1 | 1 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 2 | 2 |
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| pbuO |
Gene: OEOE_1119: Xanthine/uracil/thiamine/ascorbate permease family protein |
|
*
Lactobacillus helveticus DPC 4571 Site: position = -182 score = 51.49 sequence = AATACGACTAACGTG... Gene: lhv_2093: Xanthine/uracil/thiamine/ascorbate permease family protein |
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|
*2
Lactobacillus acidophilus NCFM Site: position = -174 score = 57.84 sequence = TACTTAACAATCAAG... Gene: LBA1959: Xanthine/uracil/thiamine/ascorbate permease family protein Gene: LBA1960: Xanthine/uracil/thiamine/ascorbate permease family protein |
*
Lactobacillus johnsonii NCC 533 Site: position = -178 score = 57.45 sequence = TACTTAACAATCAAG... Gene: LJ1830: Xanthine/uracil/thiamine/ascorbate permease family protein |
|
Gene: LSEI_0151: Xanthine/uracil/thiamine/ascorbate permease family protein |
|
|
|
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -185 score = 25.29 sequence = ATTCTATGTGAAATT... Gene: LEUM_0414: Xanthine/uracil/thiamine/ascorbate permease family protein |
Gene: LGG_00168: Xanthine/uracil/thiamine/ascorbate permease family protein |
Xanthine/uracil/thiamine/ascorbate permease family protein |
| CRON 2. | ||||||||||||||||
| adeC |
Gene: OEOE_0158: Adenine deaminase |
|
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*
Lactobacillus plantarum WCFS1 Site: position = -177 score = 70.29 sequence = TTTATCAATACAACT... Gene: lp_3334: Adenine deaminase |
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Gene: LEUM_0683: Adenine deaminase |
|
Adenine deaminase |
| CRON 3. | ||||||||||||||||
| guaB |
*
Oenococcus oeni PSU-1 Site: position = -161 score = 45.11 sequence = TAAGATAAATAGCAA... Gene: OEOE_1127: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
Gene: LAR_0110: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
2
Lactobacillus helveticus DPC 4571 Gene: lhv_0569: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) Gene: lhv_0216: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
Gene: LAF_0081: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
Gene: LSL_1452: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
Gene: LBUL_0251: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
Gene: LBA0199: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
Gene: LJ0043: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
|
|
Gene: LVIS_2058: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
|
Gene: PEPE_1719: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -319 score = 50.99 sequence = AACTAAAGAAGTTAT... Gene: LEUM_0645: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
|
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) |
| CRON 4. | ||||||||||||||||
| xpt |
*
Oenococcus oeni PSU-1 Site: position = -136 score = 57.59 sequence = AATTCAGAATGTTGA... Gene: OEOE_0537: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LAR_1358: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
*
Lactobacillus helveticus DPC 4571 Site: position = -207 score = 51.38 sequence = AGATTGAACCAACAA... Gene: lhv_0253: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LAF_1478: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -166 score = 59.52 sequence = ATGTTATCTTTAAAT... Gene: LSL_1309: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -166 score = 59.08 sequence = TAACTTAACAAATGT... Gene: LBUL_0250: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
*
Lactobacillus acidophilus NCFM Site: position = -174 score = 63.31 sequence = AGATTAAGCCAATAC... Gene: LBA0240: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
*
Lactobacillus johnsonii NCC 533 Site: position = -170 score = 50.24 sequence = TACACTCTAGATATC... Gene: LJ0227: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: lp_1139: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LSEI_1117: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LVIS_1636: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LSA1557: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: PEPE_1374: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LEUM_2059: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Gene: LGG_01076: Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
Xanthine phosphoribosyltransferase (EC 2.4.2.22) |
| pbuX |
Gene: OEOE_0536: Xanthine/uracil permease |
*
Lactobacillus reuteri JCM 1112 Site: position = -187 score = 65.34 sequence = ACTACATCAAATAAA... Gene: LAR_1713: Xanthine/uracil permease |
Gene: lhv_0252: Xanthine/uracil permease |
*
Lactobacillus fermentum IFO 3956 Site: position = -146 score = 70.06 sequence = ATTTAGAAAACGTAA... Gene: LAF_1694: Xanthine/uracil permease |
Gene: LSL_1308: Xanthine/uracil permease |
Gene: LBUL_0249: Xanthine/uracil permease |
Gene: LBA0239: Xanthine/uracil permease |
Gene: LJ0226: Xanthine/uracil permease |
*
Lactobacillus plantarum WCFS1 Site: position = -157 score = 64.87 sequence = TCAAATAAGTGGTAA... Gene: lp_2710: Xanthine/uracil permease |
Gene: LSEI_1118: Xanthine/uracil permease |
*
Lactobacillus brevis ATCC 367 Site: position = -226 score = 67.62 sequence = AATTAAAATAAGTGA... Gene: LVIS_1838: Xanthine/uracil permease |
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*
Pediococcus pentosaceus ATCC 25745 Site: position = -195 score = 57.89 sequence = CAATCAAATAAAACT... Gene: PEPE_1835: Xanthine/uracil permease |
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Gene: LGG_01077: Xanthine/uracil permease |
Xanthine/uracil permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |