Statistics of regulated genes

Genome	Genes	Operons
Oenococcus oeni PSU-1	3	2
Lactobacillus reuteri JCM 1112	1	1
Lactobacillus helveticus DPC 4571	3	2
Lactobacillus fermentum IFO 3956	1	1
Lactobacillus salivarius subsp. salivarius UCC118	2	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2	1
Lactobacillus acidophilus NCFM	4	2
Lactobacillus johnsonii NCC 533	3	2
Lactobacillus plantarum WCFS1	2	2
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367	1	1
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745	1	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2	2
Lactobacillus rhamnosus GG

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
pbuO	Oenococcus oeni PSU-1 Gene: OEOE_1119: Xanthine/uracil/thiamine/ascorbate permease family protein	Lactobacillus reuteri JCM 1112	* Lactobacillus helveticus DPC 4571 Site: position = -182 score = 51.49 sequence = AATACGACTAACGTG... Gene: lhv_2093: Xanthine/uracil/thiamine/ascorbate permease family protein	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	*2 Lactobacillus acidophilus NCFM Site: position = -174 score = 57.84 sequence = TACTTAACAATCAAG... Gene: LBA1959: Xanthine/uracil/thiamine/ascorbate permease family protein Gene: LBA1960: Xanthine/uracil/thiamine/ascorbate permease family protein	* Lactobacillus johnsonii NCC 533 Site: position = -178 score = 57.45 sequence = TACTTAACAATCAAG... Gene: LJ1830: Xanthine/uracil/thiamine/ascorbate permease family protein	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334 Gene: LSEI_0151: Xanthine/uracil/thiamine/ascorbate permease family protein	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -185 score = 25.29 sequence = ATTCTATGTGAAATT... Gene: LEUM_0414: Xanthine/uracil/thiamine/ascorbate permease family protein	Lactobacillus rhamnosus GG Gene: LGG_00168: Xanthine/uracil/thiamine/ascorbate permease family protein	Xanthine/uracil/thiamine/ascorbate permease family protein
CRON 2.
adeC	Oenococcus oeni PSU-1 Gene: OEOE_0158: Adenine deaminase	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -177 score = 70.29 sequence = TTTATCAATACAACT... Gene: lp_3334: Adenine deaminase	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0683: Adenine deaminase	Lactobacillus rhamnosus GG	Adenine deaminase
CRON 3.
guaB	* Oenococcus oeni PSU-1 Site: position = -161 score = 45.11 sequence = TAAGATAAATAGCAA... Gene: OEOE_1127: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus reuteri JCM 1112 Gene: LAR_0110: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	2 Lactobacillus helveticus DPC 4571 Gene: lhv_0569: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) Gene: lhv_0216: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus fermentum IFO 3956 Gene: LAF_0081: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1452: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0251: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus acidophilus NCFM Gene: LBA0199: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus johnsonii NCC 533 Gene: LJ0043: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_2058: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1719: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -319 score = 50.99 sequence = AACTAAAGAAGTTAT... Gene: LEUM_0645: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Lactobacillus rhamnosus GG	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
CRON 4.
xpt	* Oenococcus oeni PSU-1 Site: position = -136 score = 57.59 sequence = AATTCAGAATGTTGA... Gene: OEOE_0537: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus reuteri JCM 1112 Gene: LAR_1358: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	* Lactobacillus helveticus DPC 4571 Site: position = -207 score = 51.38 sequence = AGATTGAACCAACAA... Gene: lhv_0253: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus fermentum IFO 3956 Gene: LAF_1478: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -166 score = 59.52 sequence = ATGTTATCTTTAAAT... Gene: LSL_1309: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -166 score = 59.08 sequence = TAACTTAACAAATGT... Gene: LBUL_0250: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	* Lactobacillus acidophilus NCFM Site: position = -174 score = 63.31 sequence = AGATTAAGCCAATAC... Gene: LBA0240: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	* Lactobacillus johnsonii NCC 533 Site: position = -170 score = 50.24 sequence = TACACTCTAGATATC... Gene: LJ0227: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus plantarum WCFS1 Gene: lp_1139: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus casei ATCC 334 Gene: LSEI_1117: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus brevis ATCC 367 Gene: LVIS_1636: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus sakei subsp. sakei 23K Gene: LSA1557: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1374: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_2059: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Lactobacillus rhamnosus GG Gene: LGG_01076: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Xanthine phosphoribosyltransferase (EC 2.4.2.22)
pbuX	Oenococcus oeni PSU-1 Gene: OEOE_0536: Xanthine/uracil permease	* Lactobacillus reuteri JCM 1112 Site: position = -187 score = 65.34 sequence = ACTACATCAAATAAA... Gene: LAR_1713: Xanthine/uracil permease	Lactobacillus helveticus DPC 4571 Gene: lhv_0252: Xanthine/uracil permease	* Lactobacillus fermentum IFO 3956 Site: position = -146 score = 70.06 sequence = ATTTAGAAAACGTAA... Gene: LAF_1694: Xanthine/uracil permease	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1308: Xanthine/uracil permease	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0249: Xanthine/uracil permease	Lactobacillus acidophilus NCFM Gene: LBA0239: Xanthine/uracil permease	Lactobacillus johnsonii NCC 533 Gene: LJ0226: Xanthine/uracil permease	* Lactobacillus plantarum WCFS1 Site: position = -157 score = 64.87 sequence = TCAAATAAGTGGTAA... Gene: lp_2710: Xanthine/uracil permease	Lactobacillus casei ATCC 334 Gene: LSEI_1118: Xanthine/uracil permease	* Lactobacillus brevis ATCC 367 Site: position = -226 score = 67.62 sequence = AATTAAAATAAGTGA... Gene: LVIS_1838: Xanthine/uracil permease	Lactobacillus sakei subsp. sakei 23K	* Pediococcus pentosaceus ATCC 25745 Site: position = -195 score = 57.89 sequence = CAATCAAATAAAACT... Gene: PEPE_1835: Xanthine/uracil permease	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG Gene: LGG_01077: Xanthine/uracil permease	Xanthine/uracil permease

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