Regulog Lysine - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | Lysine |
| RFAM: | RF00168 |
| Regulation mode: | |
| Biological process: | Lysine biosynthesis |
| Effector: | Lysine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - Lysine
- By effector - Lysine
- By pathway - Lysine biosynthesis
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| lysP |
|
*
Lactobacillus reuteri JCM 1112 Site: position = -303 score = 101.89 sequence = CATTCGATGAAGAGG... Gene: LAR_1410: Lysine-specific permease |
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*
Lactobacillus fermentum IFO 3956 Site: position = -261 score = 93.13 sequence = TCACACAAGAAGAGG... Gene: LAF_1536: Lysine-specific permease |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -294 score = 120.66 sequence = CGTCGAACAGAGGTC... Gene: LSL_0188: Lysine-specific permease |
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*
Lactobacillus plantarum WCFS1 Site: position = -324 score = 108.43 sequence = TCGAAAGAAGAGGAT... Gene: lp_1008: Lysine-specific permease |
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*
Lactobacillus brevis ATCC 367 Site: position = -301 score = 121.3 sequence = ATCGAATAGAAGAGG... Gene: LVIS_1712: Lysine-specific permease |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -297 score = 107.55 sequence = TAACAAGATAAGAGG... Gene: LSA1817: Lysine-specific permease |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -292 score = 102.8 sequence = CATCGAAAGAAGAGG... Gene: PEPE_1438: Lysine-specific permease |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -242 score = 89.12 sequence = ATATTGTCAAAGAGG... Gene: LEUM_1849: Lysine-specific permease |
|
Lysine-specific permease |
| CRON 2. | ||||||||||||||||
| lysC |
Gene: OEOE_1544: Aspartokinase (EC 2.7.2.4) |
Gene: LAR_0591: Aspartokinase (EC 2.7.2.4) |
Gene: lhv_0904: Aspartokinase (EC 2.7.2.4) |
Gene: LAF_0853: Aspartokinase (EC 2.7.2.4) |
|
Gene: LBUL_1258: Aspartokinase (EC 2.7.2.4) |
2
Lactobacillus acidophilus NCFM Gene: LBA0850: Aspartokinase (EC 2.7.2.4) Gene: LBA1215: Aspartokinase (EC 2.7.2.4) |
|
Gene: lp_2308: Aspartokinase (EC 2.7.2.4) |
2
Lactobacillus casei ATCC 334 Gene: LSEI_0099: Aspartokinase (EC 2.7.2.4) Gene: LSEI_2152: Aspartokinase (EC 2.7.2.4) |
|
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -295 score = 109.38 sequence = ATTAAAAAAGAGGTT... Gene: PEPE_0137: Aspartokinase (EC 2.7.2.4) |
Gene: LEUM_0784: Aspartokinase (EC 2.7.2.4) |
2
Lactobacillus rhamnosus GG Gene: LGG_02156: Aspartokinase (EC 2.7.2.4) Gene: LGG_00113: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| dapF |
|
Gene: LAR_0590: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: lhv_0902: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: LAF_0852: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: LSL_0856: Diaminopimelate epimerase (EC 5.1.1.7) |
|
Gene: LBA0849: Diaminopimelate epimerase (EC 5.1.1.7) |
|
Gene: lp_2185: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: LSEI_0100: Diaminopimelate epimerase (EC 5.1.1.7) |
|
|
Gene: PEPE_0138: Diaminopimelate epimerase (EC 5.1.1.7) |
|
Gene: LGG_00114: Diaminopimelate epimerase (EC 5.1.1.7) |
Diaminopimelate epimerase (EC 5.1.1.7) |
| CRON 3. | ||||||||||||||||
| lysX |
*
Oenococcus oeni PSU-1 Site: position = -246 score = 85.88 sequence = GCAATAAAATAGAGG... Gene: OEOE_0751: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
|
*
Lactobacillus helveticus DPC 4571 Site: position = -280 score = 81.27 sequence = TCAATGCAATAGAGG... Gene: lhv_0123: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
|
|
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -297 score = 78.22 sequence = CCAATACAATAGAGG... Gene: LBUL_0145: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
*
Lactobacillus acidophilus NCFM Site: position = -285 score = 74.87 sequence = CCAATGCAATAGAGG... Gene: LBA0112: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
*
Lactobacillus johnsonii NCC 533 Site: position = -289 score = 82.93 sequence = CCAATGCAATAGAGG... Gene: LJ0087: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
|
*
Lactobacillus casei ATCC 334 Site: position = -284 score = 74.49 sequence = CAAGAAATAGAGGTT... Gene: LSEI_2837: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
|
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|
|
*
Lactobacillus rhamnosus GG Site: position = -279 score = 62.78 sequence = CAAGAAATAGAGGTT... Gene: LGG_02848: Predicted lysine ABC transporter, fusion of binding protein and permease protein |
Predicted lysine ABC transporter, fusion of binding protein and permease protein |
| lysY |
Gene: OEOE_0750: Predicted lysine ABC transporter, ATPase component |
|
Gene: lhv_0122: Predicted lysine ABC transporter, ATPase component |
|
|
Gene: LBUL_0144: Predicted lysine ABC transporter, ATPase component |
Gene: LBA0111: Predicted lysine ABC transporter, ATPase component |
Gene: LJ0086: Predicted lysine ABC transporter, ATPase component |
|
Gene: LSEI_2838: Predicted lysine ABC transporter, ATPase component |
|
|
|
|
Gene: LGG_02849: Predicted lysine ABC transporter, ATPase component |
Predicted lysine ABC transporter, ATPase component |
| CRON 4. | ||||||||||||||||
| lysA |
*
Oenococcus oeni PSU-1 Site: position = -226 score = 82.53 sequence = TCCGTAATAGAGGTG... Gene: OEOE_0771: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Lactobacillus reuteri JCM 1112 Site: position = -272 score = 95.35 sequence = TAAATCGAAGAGGCG... Gene: LAR_0592: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Lactobacillus helveticus DPC 4571 Site: position = -266 score = 103.28 sequence = AAATCGAAGAGGCGC... Gene: lhv_0905: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Lactobacillus fermentum IFO 3956 Site: position = -270 score = 80.68 sequence = TAAATTGAAGAGGCG... Gene: LAF_0854: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: LSL_1004: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: LBUL_1181: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Lactobacillus acidophilus NCFM Site: position = -260 score = 112.02 sequence = TAAATCATAGAGGCG... Gene: LBA0851: Diaminopimelate decarboxylase (EC 4.1.1.20) |
|
Gene: lp_1713: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Lactobacillus casei ATCC 334 Site: position = -278 score = 98.35 sequence = ACAAACAGATAGAGG... Gene: LSEI_0098: Diaminopimelate decarboxylase (EC 4.1.1.20) |
|
|
Gene: PEPE_0136: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -251 score = 78.32 sequence = TTTCACATAGAGGTC... Gene: LEUM_0667: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Lactobacillus rhamnosus GG Site: position = -281 score = 107.48 sequence = TTAAACAGATAGAGG... Gene: LGG_00112: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Diaminopimelate decarboxylase (EC 4.1.1.20) |
| dapD |
Gene: OEOE_0772: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: LAR_0593: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: lhv_0906: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: LAF_0855: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: LSL_0468: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
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Gene: LBA0852: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
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Gene: lp_2264: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: LSEI_0097: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
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Gene: PEPE_0135: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: LEUM_0668: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: LGG_00111: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
| dapL |
Gene: OEOE_0773: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: LAR_0594: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: lhv_0907: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: LAF_0856: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: LSL_0469: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
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Gene: LBA0853: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
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Gene: lp_2263: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: LSEI_0096: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
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Gene: PEPE_0134: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: LEUM_0669: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: LGG_00110: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
| dapA |
Gene: OEOE_0774: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: LAR_0595: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: lhv_0908: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: LAF_0857: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: LSL_0639: Dihydrodipicolinate synthase (EC 4.2.1.52) |
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Gene: LBA0854: Dihydrodipicolinate synthase (EC 4.2.1.52) |
|
2
Lactobacillus plantarum WCFS1 Gene: lp_2685: Dihydrodipicolinate synthase (EC 4.2.1.52) Gene: lp_2123: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: LSEI_0095: Dihydrodipicolinate synthase (EC 4.2.1.52) |
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Gene: PEPE_0133: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: LEUM_0670: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: LGG_00109: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Dihydrodipicolinate synthase (EC 4.2.1.52) |
| dapB |
Gene: OEOE_0775: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: LAR_0596: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: lhv_0909: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: LAF_0858: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: LSL_0705: Dihydrodipicolinate reductase (EC 1.3.1.26) |
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Gene: LBA0855: Dihydrodipicolinate reductase (EC 1.3.1.26) |
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Gene: lp_1874: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: LSEI_0094: Dihydrodipicolinate reductase (EC 1.3.1.26) |
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Gene: PEPE_0132: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: LEUM_0671: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: LGG_00108: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Dihydrodipicolinate reductase (EC 1.3.1.26) |
| asd |
Gene: OEOE_0776: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: LAR_0598: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: lhv_0911: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: LAF_0860: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
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Gene: LBA0857: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
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Gene: PEPE_0130: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: LEUM_1940: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
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Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
| patA |
Gene: OEOE_0777: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
Gene: LAR_0597: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
Gene: lhv_0910: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
Gene: LAF_0859: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
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Gene: LBUL_1180: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
Gene: LBA0856: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
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Gene: PEPE_0131: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
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N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) |
| dapX |
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*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -267 score = 72.69 sequence = TAAGAATCATAGAGG... Gene: LEUM_1941: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
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Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |