Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing dapD gene

Properties
Regulator type: RNA regulatory element
Name: Lysine
RFAM: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Lactobacillus acidophilus NCFM
Position: -260
Score: 112.02
Sequence: TAAATCATAGAGGCG...
Locus tag: LBA0851
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: LBA0852
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: LBA0853
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: LBA0854
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: LBA0855
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
Locus tag: LBA0856
Name: patA
Funciton: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)
Locus tag: LBA0857
Name: asd
Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
lysA-dapD-dapL-dapA-dapB-patA-asd -260 112 TAAATCATAGAGGCG... LBA0851
Lactobacillus casei ATCC 334
Position: -278
Score: 98.35
Sequence: ACAAACAGATAGAGG...
Locus tag: LSEI_0098
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: LSEI_0097
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: LSEI_0096
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: LSEI_0095
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: LSEI_0094
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
lysA-dapD-dapL-dapA-dapB -278 98.3 ACAAACAGATAGAGG... LSEI_0098
Lactobacillus fermentum IFO 3956
Position: -270
Score: 80.68
Sequence: TAAATTGAAGAGGCG...
Locus tag: LAF_0854
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: LAF_0855
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: LAF_0856
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: LAF_0857
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: LAF_0858
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
Locus tag: LAF_0859
Name: patA
Funciton: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)
Locus tag: LAF_0860
Name: asd
Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
lysA-dapD-dapL-dapA-dapB-patA-asd -270 80.7 TAAATTGAAGAGGCG... LAF_0854
Lactobacillus helveticus DPC 4571
Position: -266
Score: 103.28
Sequence: AAATCGAAGAGGCGC...
Locus tag: lhv_0905
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: lhv_0906
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: lhv_0907
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: lhv_0908
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: lhv_0909
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
Locus tag: lhv_0910
Name: patA
Funciton: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)
Locus tag: lhv_0911
Name: asd
Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
lysA-dapD-dapL-dapA-dapB-patA-asd -266 103.3 AAATCGAAGAGGCGC... lhv_0905
Lactobacillus reuteri JCM 1112
Position: -272
Score: 95.35
Sequence: TAAATCGAAGAGGCG...
Locus tag: LAR_0592
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: LAR_0593
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: LAR_0594
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: LAR_0595
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: LAR_0596
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
Locus tag: LAR_0597
Name: patA
Funciton: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)
Locus tag: LAR_0598
Name: asd
Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
lysA-dapD-dapL-dapA-dapB-patA-asd -272 95.3 TAAATCGAAGAGGCG... LAR_0592
Lactobacillus rhamnosus GG
Position: -281
Score: 107.48
Sequence: TTAAACAGATAGAGG...
Locus tag: LGG_00112
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: LGG_00111
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: LGG_00110
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
lysA-dapD-dapL -281 107.5 TTAAACAGATAGAGG... LGG_00112
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Position: -251
Score: 78.32
Sequence: TTTCACATAGAGGTC...
Locus tag: LEUM_0667
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: LEUM_0668
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: LEUM_0669
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: LEUM_0670
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: LEUM_0671
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
lysA-dapD-dapL-dapA-dapB -251 78.3 TTTCACATAGAGGTC... LEUM_0667
Oenococcus oeni PSU-1
Position: -226
Score: 82.53
Sequence: TCCGTAATAGAGGTG...
Locus tag: OEOE_0771
Name: lysA
Funciton: Diaminopimelate decarboxylase (EC 4.1.1.20)
Locus tag: OEOE_0772
Name: dapD
Funciton: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
Locus tag: OEOE_0773
Name: dapL
Funciton: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
Locus tag: OEOE_0774
Name: dapA
Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
Locus tag: OEOE_0775
Name: dapB
Funciton: Dihydrodipicolinate reductase (EC 1.3.1.26)
Locus tag: OEOE_0776
Name: asd
Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Locus tag: OEOE_0777
Name: patA
Funciton: N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)
lysA-dapD-dapL-dapA-dapB-asd-patA -226 82.5 TCCGTAATAGAGGTG... OEOE_0771
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