Regulog FMN - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	FMN
RFAM:	RF00050
Regulation mode:
Biological process:	Riboflavin biosynthesis
Effector:	Flavin mononucleotide
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - FMN
By effector - Flavin mononucleotide
By pathway - Riboflavin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1	1	1
Lactobacillus reuteri JCM 1112	4	1
Lactobacillus helveticus DPC 4571	1	1
Lactobacillus fermentum IFO 3956	5	2
Lactobacillus salivarius subsp. salivarius UCC118	1	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1	1
Lactobacillus acidophilus NCFM	1	1
Lactobacillus johnsonii NCC 533	1	1
Lactobacillus plantarum WCFS1	1	1
Lactobacillus casei ATCC 334	1	1
Lactobacillus brevis ATCC 367	5	2
Lactobacillus sakei subsp. sakei 23K	1	1
Pediococcus pentosaceus ATCC 25745	5	2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	5	2
Lactobacillus rhamnosus GG	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
ribD	Oenococcus oeni PSU-1	* Lactobacillus reuteri JCM 1112 Site: position = -287 score = 127.35 sequence = ATTTTCTTCGGGGCA... Gene: LAR_0824: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Lactobacillus helveticus DPC 4571	* Lactobacillus fermentum IFO 3956 Site: position = -297 score = 113.49 sequence = ATAATTTCTTCGGGG... Gene: LAF_0776: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	* Lactobacillus brevis ATCC 367 Site: position = -264 score = 118.45 sequence = ATGATTTCTTCGGGG... Gene: LVIS_1653: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Lactobacillus sakei subsp. sakei 23K	* Pediococcus pentosaceus ATCC 25745 Site: position = -249 score = 115.39 sequence = TAGATTTCTTCGGGG... Gene: PEPE_1820: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -259 score = 115.12 sequence = TTAATCTTCGGGGCA... Gene: LEUM_0822: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Lactobacillus rhamnosus GG	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112 Gene: LAR_0825: Riboflavin synthase alpha chain (EC 2.5.1.9)	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0775: Riboflavin synthase alpha chain (EC 2.5.1.9)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_1652: Riboflavin synthase alpha chain (EC 2.5.1.9)	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1819: Riboflavin synthase alpha chain (EC 2.5.1.9)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0823: Riboflavin synthase alpha chain (EC 2.5.1.9)	Lactobacillus rhamnosus GG	Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112 Gene: LAR_0826: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Lactobacillus helveticus DPC 4571	2 Lactobacillus fermentum IFO 3956 Gene: LAF_0774: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) Gene: LAF_1772: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1437: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_1651: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1818: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0824: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Lactobacillus rhamnosus GG	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112 Gene: LAR_0827: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956 Gene: LAF_0773: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1438: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_1650: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1817: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0825: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Lactobacillus rhamnosus GG	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)

CRON 2.
ribU	* Oenococcus oeni PSU-1 Site: position = -363 score = 117.0 sequence = AAATTCTTCGGGGCA... Gene: OEOE_1680: Substrate-specific component RibU of riboflavin ECF transporter	Lactobacillus reuteri JCM 1112	* Lactobacillus helveticus DPC 4571 Site: position = -193 score = 87.1 sequence = GTTGTCTTCAAGGCA... Gene: lhv_1057: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus fermentum IFO 3956 Site: position = -215 score = 91.72 sequence = TTTGTCTTCAAGGCA... Gene: LAF_0875: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -238 score = 98.38 sequence = TAGGTGTCTTCAGAG... Gene: LSL_0937: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -195 score = 84.7 sequence = GTTGTCTTCGGGGCA... Gene: LBUL_0772: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus acidophilus NCFM Site: position = -192 score = 86.69 sequence = GTTGTCTTCAGGGCA... Gene: LBA0965: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus johnsonii NCC 533 Site: position = -193 score = 91.8 sequence = GTTGTCTTCAGGGCA... Gene: LJ1088: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus plantarum WCFS1 Site: position = -246 score = 99.09 sequence = GGTTCATCTTCAGGG... Gene: lp_1887: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus casei ATCC 334 Site: position = -214 score = 108.43 sequence = TTCGTCTTCAGGGCA... Gene: LSEI_1373: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus brevis ATCC 367 Site: position = -233 score = 110.03 sequence = TTCATCTTCAGGGCA... Gene: LVIS_0772: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus sakei subsp. sakei 23K Site: position = -260 score = 101.54 sequence = GGTTCGTCTTCAGGG... Gene: LSA1023: Substrate-specific component RibU of riboflavin ECF transporter	* Pediococcus pentosaceus ATCC 25745 Site: position = -244 score = 94.3 sequence = GGTTCATCTTCAAGG... Gene: PEPE_1593: Substrate-specific component RibU of riboflavin ECF transporter	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -236 score = 98.02 sequence = ATAATAACTTCAGGG... Gene: LEUM_1295: Substrate-specific component RibU of riboflavin ECF transporter	* Lactobacillus rhamnosus GG Site: position = -219 score = 110.87 sequence = TTCGTCTTCAGGGCA... Gene: LGG_01383: Substrate-specific component RibU of riboflavin ECF transporter	Substrate-specific component RibU of riboflavin ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FMN - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --