Regulog FMN - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| ribD |
|
*
Lactobacillus reuteri JCM 1112 Site: position = -287 score = 127.35 sequence = ATTTTCTTCGGGGCA... Gene: LAR_0824: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
*
Lactobacillus fermentum IFO 3956 Site: position = -297 score = 113.49 sequence = ATAATTTCTTCGGGG... Gene: LAF_0776: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
|
|
|
|
|
*
Lactobacillus brevis ATCC 367 Site: position = -264 score = 118.45 sequence = ATGATTTCTTCGGGG... Gene: LVIS_1653: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -249 score = 115.39 sequence = TAGATTTCTTCGGGG... Gene: PEPE_1820: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -259 score = 115.12 sequence = TTAATCTTCGGGGCA... Gene: LEUM_0822: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
|
Gene: LAR_0825: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Gene: LAF_0775: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
|
|
|
|
|
Gene: LVIS_1652: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Gene: PEPE_1819: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: LEUM_0823: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
|
Gene: LAR_0826: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
2
Lactobacillus fermentum IFO 3956 Gene: LAF_0774: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) Gene: LAF_1772: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
|
|
|
Gene: lp_1437: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: LVIS_1651: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: PEPE_1818: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: LEUM_0824: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
|
Gene: LAR_0827: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: LAF_0773: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
|
|
Gene: lp_1438: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: LVIS_1650: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: PEPE_1817: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: LEUM_0825: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 2. | ||||||||||||||||
| ribU |
*
Oenococcus oeni PSU-1 Site: position = -363 score = 117.0 sequence = AAATTCTTCGGGGCA... Gene: OEOE_1680: Substrate-specific component RibU of riboflavin ECF transporter |
|
*
Lactobacillus helveticus DPC 4571 Site: position = -193 score = 87.1 sequence = GTTGTCTTCAAGGCA... Gene: lhv_1057: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus fermentum IFO 3956 Site: position = -215 score = 91.72 sequence = TTTGTCTTCAAGGCA... Gene: LAF_0875: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -238 score = 98.38 sequence = TAGGTGTCTTCAGAG... Gene: LSL_0937: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -195 score = 84.7 sequence = GTTGTCTTCGGGGCA... Gene: LBUL_0772: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus acidophilus NCFM Site: position = -192 score = 86.69 sequence = GTTGTCTTCAGGGCA... Gene: LBA0965: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus johnsonii NCC 533 Site: position = -193 score = 91.8 sequence = GTTGTCTTCAGGGCA... Gene: LJ1088: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus plantarum WCFS1 Site: position = -246 score = 99.09 sequence = GGTTCATCTTCAGGG... Gene: lp_1887: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus casei ATCC 334 Site: position = -214 score = 108.43 sequence = TTCGTCTTCAGGGCA... Gene: LSEI_1373: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus brevis ATCC 367 Site: position = -233 score = 110.03 sequence = TTCATCTTCAGGGCA... Gene: LVIS_0772: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -260 score = 101.54 sequence = GGTTCGTCTTCAGGG... Gene: LSA1023: Substrate-specific component RibU of riboflavin ECF transporter |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -244 score = 94.3 sequence = GGTTCATCTTCAAGG... Gene: PEPE_1593: Substrate-specific component RibU of riboflavin ECF transporter |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -236 score = 98.02 sequence = ATAATAACTTCAGGG... Gene: LEUM_1295: Substrate-specific component RibU of riboflavin ECF transporter |
*
Lactobacillus rhamnosus GG Site: position = -219 score = 110.87 sequence = TTCGTCTTCAGGGCA... Gene: LGG_01383: Substrate-specific component RibU of riboflavin ECF transporter |
Substrate-specific component RibU of riboflavin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |