Regulog Trp_leader - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | Trp_leader |
| RFAM: | RF00513 |
| Regulation mode: | |
| Biological process: | Tryptophan biosynthesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Trp_leader
- By pathway - Tryptophan biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 6 | 1 |
| Shewanella putrefaciens CN-32 | 6 | 1 |
| Shewanella sp W3-18-1 | 6 | 1 |
| Shewanella sp ANA-3 | 6 | 1 |
| Shewanella sp MR-4 | 6 | 1 |
| Shewanella sp MR-7 | 6 | 1 |
| Shewanella baltica OS155 | 6 | 1 |
| Shewanella denitrificans OS217 | 6 | 1 |
| Shewanella frigidimarina NCIMB 400 | 6 | 1 |
| Shewanella amazonensis SB2B | 6 | 1 |
| Shewanella loihica PV-4 | 6 | 1 |
| Shewanella pealeana ATCC 700345 | 6 | 1 |
| Shewanella halifaxensis HAW-EB4 | 6 | 1 |
| Shewanella piezotolerans WP3 | 6 | 1 |
| Shewanella sediminis HAW-EB3 | 6 | 1 |
| Shewanella woodyi ATCC 51908 | 6 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| trpE |
*
Shewanella oneidensis MR-1 Site: position = -160 score = 44.05 sequence = TCATTTGGTGGTGGC... Gene: SO_3019: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella putrefaciens CN-32 Site: position = -204 score = 42.57 sequence = TCATTTGGTGGTGGC... Gene: Sputcn32_2403: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella sp W3-18-1 Site: position = -200 score = 42.57 sequence = CATCATTTGGTGGTG... Gene: Sputw3181_1605: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella sp ANA-3 Site: position = -160 score = 40.72 sequence = CATCATTTGGTGGTG... Gene: Shewana3_1520: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella sp MR-4 Site: position = -160 score = 44.82 sequence = CATCATTTGGTGGTG... Gene: Shewmr4_1462: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella sp MR-7 Site: position = -160 score = 44.82 sequence = CATCATTTGGTGGTG... Gene: Shewmr7_1528: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella baltica OS155 Site: position = -205 score = 43.2 sequence = TCATTTGGTGGTGGC... Gene: Sbal_2701: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella denitrificans OS217 Site: position = -182 score = 45.89 sequence = TTTCTTGGTGGTGGC... Gene: Sden_2450: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella frigidimarina NCIMB 400 Site: position = -196 score = 33.57 sequence = ACATGGTGGTGGCAC... Gene: Sfri_1429: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella amazonensis SB2B Site: position = -149 score = 35.05 sequence = ACTGGTGGTGGCACT... Gene: Sama_2129: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella loihica PV-4 Site: position = -200 score = 34.5 sequence = TCAACTGGTGGTGGC... Gene: Shew_2251: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella pealeana ATCC 700345 Site: position = -224 score = 41.52 sequence = CATTAATTGGTGGTG... Gene: Spea_1590: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella halifaxensis HAW-EB4 Site: position = -221 score = 40.48 sequence = CATCAATTGGTGGTG... Gene: Shal_1658: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella piezotolerans WP3 Site: position = -231 score = 45.03 sequence = CATTAATTGGTGGTG... Gene: swp_1923: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella sediminis HAW-EB3 Site: position = -184 score = 46.52 sequence = CATTAATTGGTGGTG... Gene: Ssed_1686: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Shewanella woodyi ATCC 51908 Site: position = -179 score = 49.36 sequence = TCAATTGGTGGTGGC... Gene: Swoo_2912: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
| trpG |
Gene: SO_3020: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sputcn32_2404: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sputw3181_1604: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Shewana3_1519: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Shewmr4_1461: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Shewmr7_1527: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sbal_2702: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sden_2451: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sfri_1428: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Sama_2130: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Shew_2252: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Spea_1589: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Shal_1657: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: swp_1922: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Ssed_1685: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Gene: Swoo_2913: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
| trpD |
Gene: SO_3021: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sputcn32_2405: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sputw3181_1603: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Shewana3_1518: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Shewmr4_1460: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Shewmr7_1526: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sbal_2703: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sden_2452: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sfri_1427: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Sama_2131: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Shew_2253: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Spea_1588: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Shal_1656: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: swp_1921: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Ssed_1684: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Swoo_2914: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
| trpC |
Gene: SO_3022: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sputcn32_2406: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sputw3181_1602: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Shewana3_1517: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Shewmr4_1459: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Shewmr7_1525: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sbal_2704: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sden_2453: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sfri_1426: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Sama_2132: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Shew_2254: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Spea_1587: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Shal_1655: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: swp_1920: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Ssed_1683: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Swoo_2915: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
| trpB |
Gene: SO_3023: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sputcn32_2407: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sputw3181_1601: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Shewana3_1516: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Shewmr4_1458: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Shewmr7_1524: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sbal_2705: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sden_2454: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sfri_1425: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Sama_2133: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Shew_2255: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Spea_1586: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Shal_1654: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: swp_1919: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Ssed_1682: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Swoo_2916: Tryptophan synthase beta chain (EC 4.2.1.20) |
Tryptophan synthase beta chain (EC 4.2.1.20) |
| trpA |
Gene: SO_3024: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sputcn32_2408: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sputw3181_1600: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Shewana3_1515: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Shewmr4_1457: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Shewmr7_1523: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sbal_2706: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sden_2455: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sfri_1424: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Sama_2134: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Shew_2256: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Spea_1585: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Shal_1653: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: swp_1918: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Ssed_1681: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Swoo_2917: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Tryptophan synthase alpha chain (EC 4.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |