Regulog Leu_leader - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | Leu_leader |
| RFAM: | RF00512 |
| Regulation mode: | |
| Biological process: | Branched-chain amino acid biosynthesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Leu_leader
- By pathway - Branched-chain amino acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 4 | 1 |
| Shewanella putrefaciens CN-32 | 4 | 1 |
| Shewanella sp W3-18-1 | 4 | 1 |
| Shewanella sp ANA-3 | 4 | 1 |
| Shewanella sp MR-4 | 4 | 1 |
| Shewanella sp MR-7 | 4 | 1 |
| Shewanella baltica OS155 | 4 | 1 |
| Shewanella denitrificans OS217 | 4 | 1 |
| Shewanella frigidimarina NCIMB 400 | 4 | 1 |
| Shewanella amazonensis SB2B | 4 | 1 |
| Shewanella loihica PV-4 | 4 | 1 |
| Shewanella pealeana ATCC 700345 | 4 | 1 |
| Shewanella halifaxensis HAW-EB4 | 4 | 1 |
| Shewanella piezotolerans WP3 | 4 | 1 |
| Shewanella sediminis HAW-EB3 | 4 | 1 |
| Shewanella woodyi ATCC 51908 | 4 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| leuA |
*
Shewanella oneidensis MR-1 Site: position = -111 score = 24.15 sequence = TCGATAGATAGGCAA... Gene: SO_4236: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella putrefaciens CN-32 Site: position = -105 score = 22.08 sequence = AAGAGGCAAAGCATT... Gene: Sputcn32_0471: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella sp W3-18-1 Site: position = -105 score = 22.08 sequence = AAGAGGCAAAGCATT... Gene: Sputw3181_0374: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella sp ANA-3 Site: position = -111 score = 23.81 sequence = TCGATAGATAGGCAA... Gene: Shewana3_3761: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella sp MR-4 Site: position = -111 score = 21.9 sequence = TCGATAGATAGGCAA... Gene: Shewmr4_3588: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella sp MR-7 Site: position = -109 score = 21.9 sequence = GATAGATAGGCAAAG... Gene: Shewmr7_0368: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella baltica OS155 Site: position = -105 score = 21.79 sequence = AATAGGCAAAGCATT... Gene: Sbal_0386: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella denitrificans OS217 Site: position = -173 score = 17.57 sequence = GAAACACACTTACTT... Gene: Sden_0334: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -212 score = 29.92 sequence = ACATAATGAACACAC... Gene: Sfri_3820: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella amazonensis SB2B Site: position = -110 score = 19.96 sequence = GCTAGCCAAGCAAAG... Gene: Sama_0335: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella loihica PV-4 Site: position = -134 score = 20.6 sequence = GGAGAATGTAGTGTT... Gene: Shew_3472: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella pealeana ATCC 700345 Site: position = -136 score = 17.71 sequence = GGAGGACTTAGTGCT... Gene: Spea_3828: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -212 score = 19.28 sequence = GTGATGAAATATAAC... Gene: Shal_0438: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella piezotolerans WP3 Site: position = -192 score = 21.21 sequence = ACCATTTATGAAGCG... Gene: swp_2213: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella sediminis HAW-EB3 Site: position = -194 score = 20.76 sequence = ATGAAAATTAAAAGT... Gene: Ssed_0393: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Shewanella woodyi ATCC 51908 Site: position = -199 score = 24.84 sequence = AGATGAATATTAGCC... Gene: Swoo_4550: 2-isopropylmalate synthase (EC 2.3.3.13) |
2-isopropylmalate synthase (EC 2.3.3.13) |
| leuB |
Gene: SO_4235: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Sputcn32_0472: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Sputw3181_0375: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Shewana3_3760: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Shewmr4_3587: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Shewmr7_0369: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Sbal_0387: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Sden_0335: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Sfri_3819: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Sama_0336: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Shew_3471: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Spea_3827: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Shal_0439: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: swp_2214: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Ssed_0394: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
Gene: Swoo_4549: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
| leuC |
Gene: SO_4234: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Sputcn32_0473: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Sputw3181_0376: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Shewana3_3759: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Shewmr4_3586: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Shewmr7_0370: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Sbal_0388: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Sden_0336: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Sfri_3818: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Sama_0337: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Shew_3470: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Spea_3826: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Shal_0440: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: swp_2215: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Ssed_0395: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: Swoo_4548: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
| leuD |
Gene: SO_4233: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Sputcn32_0474: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Sputw3181_0377: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Shewana3_3758: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Shewmr4_3585: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Shewmr7_0371: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Sbal_0389: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Sden_0337: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Sfri_3817: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Sama_0338: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Shew_3469: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Spea_3825: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Shal_0441: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: swp_2216: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Ssed_0396: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Swoo_4547: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |