Regulog Leu_leader - Shewanellaceae

Properties
Regulator type:	RNA regulatory element
Name:	Leu_leader
RFAM:	RF00512
Regulation mode:
Biological process:	Branched-chain amino acid biosynthesis
Effector:
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - Leu_leader
By pathway - Branched-chain amino acid biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	4	1
Shewanella putrefaciens CN-32	4	1
Shewanella sp W3-18-1	4	1
Shewanella sp ANA-3	4	1
Shewanella sp MR-4	4	1
Shewanella sp MR-7	4	1
Shewanella baltica OS155	4	1
Shewanella denitrificans OS217	4	1
Shewanella frigidimarina NCIMB 400	4	1
Shewanella amazonensis SB2B	4	1
Shewanella loihica PV-4	4	1
Shewanella pealeana ATCC 700345	4	1
Shewanella halifaxensis HAW-EB4	4	1
Shewanella piezotolerans WP3	4	1
Shewanella sediminis HAW-EB3	4	1
Shewanella woodyi ATCC 51908	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
leuA	* Shewanella oneidensis MR-1 Site: position = -111 score = 24.15 sequence = TCGATAGATAGGCAA... Gene: SO_4236: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella putrefaciens CN-32 Site: position = -105 score = 22.08 sequence = AAGAGGCAAAGCATT... Gene: Sputcn32_0471: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella sp W3-18-1 Site: position = -105 score = 22.08 sequence = AAGAGGCAAAGCATT... Gene: Sputw3181_0374: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella sp ANA-3 Site: position = -111 score = 23.81 sequence = TCGATAGATAGGCAA... Gene: Shewana3_3761: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella sp MR-4 Site: position = -111 score = 21.9 sequence = TCGATAGATAGGCAA... Gene: Shewmr4_3588: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella sp MR-7 Site: position = -109 score = 21.9 sequence = GATAGATAGGCAAAG... Gene: Shewmr7_0368: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella baltica OS155 Site: position = -105 score = 21.79 sequence = AATAGGCAAAGCATT... Gene: Sbal_0386: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella denitrificans OS217 Site: position = -173 score = 17.57 sequence = GAAACACACTTACTT... Gene: Sden_0334: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella frigidimarina NCIMB 400 Site: position = -212 score = 29.92 sequence = ACATAATGAACACAC... Gene: Sfri_3820: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella amazonensis SB2B Site: position = -110 score = 19.96 sequence = GCTAGCCAAGCAAAG... Gene: Sama_0335: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella loihica PV-4 Site: position = -134 score = 20.6 sequence = GGAGAATGTAGTGTT... Gene: Shew_3472: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella pealeana ATCC 700345 Site: position = -136 score = 17.71 sequence = GGAGGACTTAGTGCT... Gene: Spea_3828: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella halifaxensis HAW-EB4 Site: position = -212 score = 19.28 sequence = GTGATGAAATATAAC... Gene: Shal_0438: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella piezotolerans WP3 Site: position = -192 score = 21.21 sequence = ACCATTTATGAAGCG... Gene: swp_2213: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella sediminis HAW-EB3 Site: position = -194 score = 20.76 sequence = ATGAAAATTAAAAGT... Gene: Ssed_0393: 2-isopropylmalate synthase (EC 2.3.3.13)	* Shewanella woodyi ATCC 51908 Site: position = -199 score = 24.84 sequence = AGATGAATATTAGCC... Gene: Swoo_4550: 2-isopropylmalate synthase (EC 2.3.3.13)	2-isopropylmalate synthase (EC 2.3.3.13)
leuB	Shewanella oneidensis MR-1 Gene: SO_4235: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0472: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella sp W3-18-1 Gene: Sputw3181_0375: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella sp ANA-3 Gene: Shewana3_3760: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella sp MR-4 Gene: Shewmr4_3587: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella sp MR-7 Gene: Shewmr7_0369: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella baltica OS155 Gene: Sbal_0387: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella denitrificans OS217 Gene: Sden_0335: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3819: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella amazonensis SB2B Gene: Sama_0336: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella loihica PV-4 Gene: Shew_3471: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella pealeana ATCC 700345 Gene: Spea_3827: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0439: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella piezotolerans WP3 Gene: swp_2214: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella sediminis HAW-EB3 Gene: Ssed_0394: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Shewanella woodyi ATCC 51908 Gene: Swoo_4549: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)	3-isopropylmalate dehydrogenase (EC 1.1.1.85)
leuC	Shewanella oneidensis MR-1 Gene: SO_4234: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0473: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella sp W3-18-1 Gene: Sputw3181_0376: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella sp ANA-3 Gene: Shewana3_3759: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella sp MR-4 Gene: Shewmr4_3586: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella sp MR-7 Gene: Shewmr7_0370: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella baltica OS155 Gene: Sbal_0388: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella denitrificans OS217 Gene: Sden_0336: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3818: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella amazonensis SB2B Gene: Sama_0337: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella loihica PV-4 Gene: Shew_3470: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella pealeana ATCC 700345 Gene: Spea_3826: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0440: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella piezotolerans WP3 Gene: swp_2215: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella sediminis HAW-EB3 Gene: Ssed_0395: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Shewanella woodyi ATCC 51908 Gene: Swoo_4548: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
leuD	Shewanella oneidensis MR-1 Gene: SO_4233: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0474: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella sp W3-18-1 Gene: Sputw3181_0377: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella sp ANA-3 Gene: Shewana3_3758: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella sp MR-4 Gene: Shewmr4_3585: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella sp MR-7 Gene: Shewmr7_0371: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella baltica OS155 Gene: Sbal_0389: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella denitrificans OS217 Gene: Sden_0337: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3817: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella amazonensis SB2B Gene: Sama_0338: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella loihica PV-4 Gene: Shew_3469: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella pealeana ATCC 700345 Gene: Spea_3825: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0441: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella piezotolerans WP3 Gene: swp_2216: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella sediminis HAW-EB3 Gene: Ssed_0396: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Shewanella woodyi ATCC 51908 Gene: Swoo_4547: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Leu_leader - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --