Regulog L21_leader - Thermotogales
| Regulator type: | RNA regulatory element |
| Name: | L21_leader |
| RFAM: | RF00559 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Thermotogae |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - L21_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | ||
| Thermotoga sp. RQ2 | ||
| Thermotoga neapolitana DSM 4359 | 6 | 1 |
| Thermotoga petrophila RKU-1 | ||
| Thermotoga naphthophila RKU-10 | ||
| Thermotoga lettingae TMO | 5 | 1 |
| Thermosipho africanus TCF52B | 6 | 1 |
| Thermosipho melanesiensis BI429 | 6 | 1 |
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | ||
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rplU |
Gene: TM1458: LSU ribosomal protein L21p |
Gene: TRQ2_1350: LSU ribosomal protein L21p |
*
Thermotoga neapolitana DSM 4359 Site: position = -7 score = 19.27 sequence = GCTTGAAGTGCGTCG... Gene: CTN_1035: LSU ribosomal protein L21p |
Gene: Tpet_1336: LSU ribosomal protein L21p |
Gene: Tnap_1353: LSU ribosomal protein L21p |
*
Thermotoga lettingae TMO Site: position = -95 score = 23.8 sequence = AGTATTTACACAAGC... Gene: Tlet_1979: LSU ribosomal protein L21p |
*
Thermosipho africanus TCF52B Site: position = -98 score = 19.34 sequence = TCTTAGGTTATAGTC... Gene: THA_1316: LSU ribosomal protein L21p |
*
Thermosipho melanesiensis BI429 Site: position = -95 score = 16.46 sequence = CTTAAGGTTATAGTC... Gene: Tmel_1036: LSU ribosomal protein L21p |
Gene: Fnod_0438: LSU ribosomal protein L21p |
Gene: Pmob_0805: LSU ribosomal protein L21p |
Gene: Kole_0338: LSU ribosomal protein L21p |
LSU ribosomal protein L21p |
| ysxB |
Gene: TM1457: FIG139598: Potential ribosomal protein |
Gene: TRQ2_1349: FIG139598: Potential ribosomal protein |
Gene: CTN_1036: FIG139598: Potential ribosomal protein |
Gene: Tpet_1337: FIG139598: Potential ribosomal protein |
Gene: Tnap_1354: FIG139598: Potential ribosomal protein |
Gene: Tlet_1978: FIG139598: Potential ribosomal protein |
Gene: THA_1315: FIG139598: Potential ribosomal protein |
Gene: Tmel_1035: FIG139598: Potential ribosomal protein |
Gene: Fnod_0437: FIG139598: Potential ribosomal protein |
Gene: Pmob_0804: FIG139598: Potential ribosomal protein |
|
FIG139598: Potential ribosomal protein |
| rpmA |
Gene: TM1456: LSU ribosomal protein L27p |
Gene: TRQ2_1348: LSU ribosomal protein L27p |
Gene: CTN_1037: LSU ribosomal protein L27p |
Gene: Tpet_1338: LSU ribosomal protein L27p |
Gene: Tnap_1355: LSU ribosomal protein L27p |
Gene: Tlet_1977: LSU ribosomal protein L27p |
Gene: THA_1314: LSU ribosomal protein L27p |
Gene: Tmel_1034: LSU ribosomal protein L27p |
Gene: Fnod_0436: LSU ribosomal protein L27p |
Gene: Pmob_0803: LSU ribosomal protein L27p |
Gene: Kole_0339: LSU ribosomal protein L27p |
LSU ribosomal protein L27p |
| ribU |
Gene: TM1455: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: TRQ2_1347: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: CTN_1038: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: Tpet_1339: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: Tnap_1356: Substrate-specific component RibU of riboflavin ECF transporter |
|
Gene: THA_1313: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: Tmel_1033: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: Fnod_0435: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: Pmob_0802: Substrate-specific component RibU of riboflavin ECF transporter |
|
Substrate-specific component RibU of riboflavin ECF transporter |
| rplM |
Gene: TM1454: LSU ribosomal protein L13p (L13Ae) |
Gene: TRQ2_1346: LSU ribosomal protein L13p (L13Ae) |
Gene: CTN_1039: LSU ribosomal protein L13p (L13Ae) |
Gene: Tpet_1340: LSU ribosomal protein L13p (L13Ae) |
Gene: Tnap_1357: LSU ribosomal protein L13p (L13Ae) |
Gene: Tlet_1976: LSU ribosomal protein L13p (L13Ae) |
Gene: THA_1312: LSU ribosomal protein L13p (L13Ae) |
Gene: Tmel_1032: LSU ribosomal protein L13p (L13Ae) |
Gene: Fnod_0434: LSU ribosomal protein L13p (L13Ae) |
Gene: Pmob_0801: LSU ribosomal protein L13p (L13Ae) |
Gene: Kole_0340: LSU ribosomal protein L13p (L13Ae) |
LSU ribosomal protein L13p (L13Ae) |
| rpsI |
Gene: TM1453: SSU ribosomal protein S9p (S16e) |
Gene: TRQ2_1345: SSU ribosomal protein S9p (S16e) |
Gene: CTN_1040: SSU ribosomal protein S9p (S16e) |
Gene: Tpet_1341: SSU ribosomal protein S9p (S16e) |
Gene: Tnap_1358: SSU ribosomal protein S9p (S16e) |
Gene: Tlet_1975: SSU ribosomal protein S9p (S16e) |
Gene: THA_1311: SSU ribosomal protein S9p (S16e) |
Gene: Tmel_1031: SSU ribosomal protein S9p (S16e) |
Gene: Fnod_0433: SSU ribosomal protein S9p (S16e) |
Gene: Pmob_0800: SSU ribosomal protein S9p (S16e) |
Gene: Kole_0341: SSU ribosomal protein S9p (S16e) |
SSU ribosomal protein S9p (S16e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |