Regulog L21_leader - Thermotogales

Properties
Regulator type:	RNA regulatory element
Name:	L21_leader
RFAM:	RF00559
Regulation mode:
Biological process:	Ribosome biogenesis
Effector:
Phylum:	Thermotogae

Member of regulog collections

By taxonomy - Thermotogales
By RNA motif - L21_leader
By pathway - Ribosome biogenesis

Statistics of regulated genes
Genome	Genes	Operons
Thermotoga maritima MSB8
Thermotoga sp. RQ2
Thermotoga neapolitana DSM 4359	6	1
Thermotoga petrophila RKU-1
Thermotoga naphthophila RKU-10
Thermotoga lettingae TMO	5	1
Thermosipho africanus TCF52B	6	1
Thermosipho melanesiensis BI429	6	1
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95
Thermotogales bacterium TBF 19.5.1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
rplU	Thermotoga maritima MSB8 Gene: TM1458: LSU ribosomal protein L21p	Thermotoga sp. RQ2 Gene: TRQ2_1350: LSU ribosomal protein L21p	* Thermotoga neapolitana DSM 4359 Site: position = -7 score = 19.27 sequence = GCTTGAAGTGCGTCG... Gene: CTN_1035: LSU ribosomal protein L21p	Thermotoga petrophila RKU-1 Gene: Tpet_1336: LSU ribosomal protein L21p	Thermotoga naphthophila RKU-10 Gene: Tnap_1353: LSU ribosomal protein L21p	* Thermotoga lettingae TMO Site: position = -95 score = 23.8 sequence = AGTATTTACACAAGC... Gene: Tlet_1979: LSU ribosomal protein L21p	* Thermosipho africanus TCF52B Site: position = -98 score = 19.34 sequence = TCTTAGGTTATAGTC... Gene: THA_1316: LSU ribosomal protein L21p	* Thermosipho melanesiensis BI429 Site: position = -95 score = 16.46 sequence = CTTAAGGTTATAGTC... Gene: Tmel_1036: LSU ribosomal protein L21p	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0438: LSU ribosomal protein L21p	Petrotoga mobilis SJ95 Gene: Pmob_0805: LSU ribosomal protein L21p	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0338: LSU ribosomal protein L21p	LSU ribosomal protein L21p
ysxB	Thermotoga maritima MSB8 Gene: TM1457: FIG139598: Potential ribosomal protein	Thermotoga sp. RQ2 Gene: TRQ2_1349: FIG139598: Potential ribosomal protein	Thermotoga neapolitana DSM 4359 Gene: CTN_1036: FIG139598: Potential ribosomal protein	Thermotoga petrophila RKU-1 Gene: Tpet_1337: FIG139598: Potential ribosomal protein	Thermotoga naphthophila RKU-10 Gene: Tnap_1354: FIG139598: Potential ribosomal protein	Thermotoga lettingae TMO Gene: Tlet_1978: FIG139598: Potential ribosomal protein	Thermosipho africanus TCF52B Gene: THA_1315: FIG139598: Potential ribosomal protein	Thermosipho melanesiensis BI429 Gene: Tmel_1035: FIG139598: Potential ribosomal protein	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0437: FIG139598: Potential ribosomal protein	Petrotoga mobilis SJ95 Gene: Pmob_0804: FIG139598: Potential ribosomal protein	Thermotogales bacterium TBF 19.5.1	FIG139598: Potential ribosomal protein
rpmA	Thermotoga maritima MSB8 Gene: TM1456: LSU ribosomal protein L27p	Thermotoga sp. RQ2 Gene: TRQ2_1348: LSU ribosomal protein L27p	Thermotoga neapolitana DSM 4359 Gene: CTN_1037: LSU ribosomal protein L27p	Thermotoga petrophila RKU-1 Gene: Tpet_1338: LSU ribosomal protein L27p	Thermotoga naphthophila RKU-10 Gene: Tnap_1355: LSU ribosomal protein L27p	Thermotoga lettingae TMO Gene: Tlet_1977: LSU ribosomal protein L27p	Thermosipho africanus TCF52B Gene: THA_1314: LSU ribosomal protein L27p	Thermosipho melanesiensis BI429 Gene: Tmel_1034: LSU ribosomal protein L27p	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0436: LSU ribosomal protein L27p	Petrotoga mobilis SJ95 Gene: Pmob_0803: LSU ribosomal protein L27p	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0339: LSU ribosomal protein L27p	LSU ribosomal protein L27p
ribU	Thermotoga maritima MSB8 Gene: TM1455: Substrate-specific component RibU of riboflavin ECF transporter	Thermotoga sp. RQ2 Gene: TRQ2_1347: Substrate-specific component RibU of riboflavin ECF transporter	Thermotoga neapolitana DSM 4359 Gene: CTN_1038: Substrate-specific component RibU of riboflavin ECF transporter	Thermotoga petrophila RKU-1 Gene: Tpet_1339: Substrate-specific component RibU of riboflavin ECF transporter	Thermotoga naphthophila RKU-10 Gene: Tnap_1356: Substrate-specific component RibU of riboflavin ECF transporter	Thermotoga lettingae TMO	Thermosipho africanus TCF52B Gene: THA_1313: Substrate-specific component RibU of riboflavin ECF transporter	Thermosipho melanesiensis BI429 Gene: Tmel_1033: Substrate-specific component RibU of riboflavin ECF transporter	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0435: Substrate-specific component RibU of riboflavin ECF transporter	Petrotoga mobilis SJ95 Gene: Pmob_0802: Substrate-specific component RibU of riboflavin ECF transporter	Thermotogales bacterium TBF 19.5.1	Substrate-specific component RibU of riboflavin ECF transporter
rplM	Thermotoga maritima MSB8 Gene: TM1454: LSU ribosomal protein L13p (L13Ae)	Thermotoga sp. RQ2 Gene: TRQ2_1346: LSU ribosomal protein L13p (L13Ae)	Thermotoga neapolitana DSM 4359 Gene: CTN_1039: LSU ribosomal protein L13p (L13Ae)	Thermotoga petrophila RKU-1 Gene: Tpet_1340: LSU ribosomal protein L13p (L13Ae)	Thermotoga naphthophila RKU-10 Gene: Tnap_1357: LSU ribosomal protein L13p (L13Ae)	Thermotoga lettingae TMO Gene: Tlet_1976: LSU ribosomal protein L13p (L13Ae)	Thermosipho africanus TCF52B Gene: THA_1312: LSU ribosomal protein L13p (L13Ae)	Thermosipho melanesiensis BI429 Gene: Tmel_1032: LSU ribosomal protein L13p (L13Ae)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0434: LSU ribosomal protein L13p (L13Ae)	Petrotoga mobilis SJ95 Gene: Pmob_0801: LSU ribosomal protein L13p (L13Ae)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0340: LSU ribosomal protein L13p (L13Ae)	LSU ribosomal protein L13p (L13Ae)
rpsI	Thermotoga maritima MSB8 Gene: TM1453: SSU ribosomal protein S9p (S16e)	Thermotoga sp. RQ2 Gene: TRQ2_1345: SSU ribosomal protein S9p (S16e)	Thermotoga neapolitana DSM 4359 Gene: CTN_1040: SSU ribosomal protein S9p (S16e)	Thermotoga petrophila RKU-1 Gene: Tpet_1341: SSU ribosomal protein S9p (S16e)	Thermotoga naphthophila RKU-10 Gene: Tnap_1358: SSU ribosomal protein S9p (S16e)	Thermotoga lettingae TMO Gene: Tlet_1975: SSU ribosomal protein S9p (S16e)	Thermosipho africanus TCF52B Gene: THA_1311: SSU ribosomal protein S9p (S16e)	Thermosipho melanesiensis BI429 Gene: Tmel_1031: SSU ribosomal protein S9p (S16e)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0433: SSU ribosomal protein S9p (S16e)	Petrotoga mobilis SJ95 Gene: Pmob_0800: SSU ribosomal protein S9p (S16e)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0341: SSU ribosomal protein S9p (S16e)	SSU ribosomal protein S9p (S16e)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog L21_leader - Thermotogales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --