Regulog AgaR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - AgaR
- By taxonomy - Psychromonadaceae/Aeromonadales
- By TF family - DeoR
- By effector - N-acetylgalactosamine-6-phosphate
- By effector - Galactosamine-6-phosphate
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | ||
| Psychromonas sp. CNPT3 | 4 | 2 |
| Moritella sp. PE36 | ||
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 10 | 2 |
| Aeromonas salmonicida subsp. salmonicida A449 | ||
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| agaR |
|
*
Psychromonas sp. CNPT3 Site: position = -143 score = -0.72971 sequence = AAAAGGAAATGAAAG Site: position = -221 score = -0.966611 sequence = ACAATAAAATGAAAG Site: position = -201 score = -0.442805 sequence = AAAACAAAACGAAAG Gene: PCNPT3_13671: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -50 score = 0.0782456 sequence = GTAACGAAGTGAAAG Site: position = -199 score = -0.213964 sequence = GAAACGAAATAAAAG Site: position = -153 score = -0.712886 sequence = GAAATGAATCGAAAG Gene: AHA_0813: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| CRON 2. | |||||||
| agaZ |
|
Gene: PCNPT3_12028: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -134 score = 5.62484 sequence = CTTTCGATTCATTTC Site: position = -88 score = 4.93865 sequence = CTTTTATTTCGTTTC Site: position = -237 score = 4.70528 sequence = CTTTCACTTCGTTAC Gene: AHA_0812: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
|
|
Tagatose-6-phosphate kinase (EC 2.7.1.144) |
| agaS |
|
Gene: PCNPT3_12023: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
|
Gene: AHA_0811: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
|
|
Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaV |
|
*
Psychromonas sp. CNPT3 Site: position = -128 score = 4.97722 sequence = CTTTCATTTTATTGT Site: position = -206 score = 5.36998 sequence = CTTTCATTTCCTTTT Site: position = -148 score = 5.77223 sequence = CTTTCGTTTTGTTTT Gene: PCNPT3_13666: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
|
Gene: AHA_0810: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
|
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PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
| agaW |
|
Gene: PCNPT3_13661: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
|
Gene: AHA_0809: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
|
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PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
| agaE |
|
2
Psychromonas sp. CNPT3 Gene: PCNPT3_13645: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) Gene: PCNPT3_13656: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
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Gene: AHA_0808: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
|
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PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
| agaF |
|
Gene: PCNPT3_13640: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
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Gene: AHA_0807: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
|
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PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
| agaA |
|
|
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Gene: AHA_0806: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
|
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N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| agaY |
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|
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Gene: AHA_0805: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
|
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Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
| agaH |
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Gene: AHA_0804: Predicted secreted ?-N-acetylgalactosaminidase (EC 3.2.1.49), GH36 family |
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Predicted secreted ?-N-acetylgalactosaminidase (EC 3.2.1.49), GH36 family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |