Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog HexR2 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 9 4
Marinobacter aqueolei 8 4
Marinobacter sp. ELB17 7 4
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
edd
*
Hahella chejuensis KCTC 2396

Site:
position = -185
score = -0.750554
sequence = GTAGTAAATATA

Gene: HCH_00433: Phosphogluconate dehydratase (EC 4.2.1.12)
*
Marinobacter aqueolei

Site:
position = -112
score = -0.0475158
sequence = GTAGTAAAGTTA

Gene: Maqu_1830: Phosphogluconate dehydratase (EC 4.2.1.12)
*
Marinobacter sp. ELB17

Site:
position = -125
score = -0.750554
sequence = GTAGTAAATGTA

Gene: MELB17_08933: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Oceanobacter sp. RED65

Gene: RED65_10939: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1080: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Saccharophagus degradans 2-40

Gene: Sde_1381: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107

Gene: CJA_1349: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0936: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Reinekea sp. MED297

Gene: MED297_17982: Phosphogluconate dehydratase (EC 4.2.1.12)
 
Alcanivorax borkumensis SK2
Phosphogluconate dehydratase (EC 4.2.1.12)
glk
 
Hahella chejuensis KCTC 2396

Gene: HCH_00434: Glucokinase (EC 2.7.1.2)
 
Marinobacter aqueolei

Gene: Maqu_1829: Glucokinase (EC 2.7.1.2)
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0935: Glucokinase (EC 2.7.1.2)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glucokinase (EC 2.7.1.2)
PF00248
 
Hahella chejuensis KCTC 2396

Gene: HCH_00435: Putative aldo/keto reductase
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_00655: Putative aldo/keto reductase
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2385: Putative aldo/keto reductase
 
Saccharophagus degradans 2-40

Gene: Sde_3385: Putative aldo/keto reductase
 
Teredinibacter turnerae T7901

Gene: TERTU_0648: Putative aldo/keto reductase
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0933: Putative aldo/keto reductase
 
Reinekea sp. MED297

Gene: MED297_10441: Putative aldo/keto reductase
 
Alcanivorax borkumensis SK2
Putative aldo/keto reductase
HCH_01912
 
Hahella chejuensis KCTC 2396

Gene: HCH_01912: Hypothetical protein VC0266 (sugar utilization related?)
 
Marinobacter aqueolei

Gene: Maqu_1828: Hypothetical protein VC0266 (sugar utilization related?)
 
Marinobacter sp. ELB17

Gene: MELB17_02340: Hypothetical protein VC0266 (sugar utilization related?)
 
Oceanobacter sp. RED65

Gene: RED65_02108: Hypothetical protein VC0266 (sugar utilization related?)
 
Oceanospirillum sp. MED92

Gene: MED92_08901: Hypothetical protein VC0266 (sugar utilization related?)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1429: Hypothetical protein VC0266 (sugar utilization related?)
 
Saccharophagus degradans 2-40

Gene: Sde_2770: Hypothetical protein VC0266 (sugar utilization related?)
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0686: Hypothetical protein VC0266 (sugar utilization related?)
 
Reinekea sp. MED297

Gene: MED297_14410: Hypothetical protein VC0266 (sugar utilization related?)
 
Alcanivorax borkumensis SK2

Gene: ABO_1030: Hypothetical protein VC0266 (sugar utilization related?)
Hypothetical protein VC0266 (sugar utilization related?)
 
CRON 2.
gapA
*
Hahella chejuensis KCTC 2396

Site:
position = -49
score = 5.42734
sequence = TATATTTACTAC

Gene: HCH_00432: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -58
score = 5.22097
sequence = TACATTTACTAC

Gene: MELB17_08928: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92

Gene: MED92_09984: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1079: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Saccharophagus degradans 2-40

Gene: Sde_1379: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107

Gene: CJA_1353: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_0937: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
pykA
 
Hahella chejuensis KCTC 2396

Gene: HCH_00431: Pyruvate kinase (EC 2.7.1.40)
*
Marinobacter aqueolei

Site:
position = -175
score = 5.0992
sequence = TAACTTTACTAC

Gene: Maqu_1831: Pyruvate kinase (EC 2.7.1.40)
 
Marinobacter sp. ELB17

Gene: MELB17_08923: Pyruvate kinase (EC 2.7.1.40)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1078: Pyruvate kinase (EC 2.7.1.40)
 
Saccharophagus degradans 2-40

Gene: Sde_1308: Pyruvate kinase (EC 2.7.1.40)
 
Teredinibacter turnerae T7901

Gene: TERTU_2784: Pyruvate kinase (EC 2.7.1.40)
 
Cellvibrio japonicus Ueda107

Gene: CJA_1354: Pyruvate kinase (EC 2.7.1.40)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1559: Pyruvate kinase (EC 2.7.1.40)
 
Reinekea sp. MED297

Gene: MED297_14200: Pyruvate kinase (EC 2.7.1.40)
 
Alcanivorax borkumensis SK2
Pyruvate kinase (EC 2.7.1.40)
hexR
*
Hahella chejuensis KCTC 2396

Site:
position = -185
score = -1.45359
sequence = GTAGTAATTATT

Gene: HCH_00346: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Marinobacter aqueolei

Site:
position = -156
score = -0.750554
sequence = GTAGTAGTTTTA

Gene: Maqu_1835: Central carbohydrate metabolism transcription regulator HexR, RpiR family
*
Marinobacter sp. ELB17

Site:
position = -149
score = -0.750554
sequence = GTAGTAATTTTA

Gene: MELB17_08903: Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Central carbohydrate metabolism transcription regulator HexR, RpiR family
 
CRON 3.
zwf
*
Hahella chejuensis KCTC 2396

Site:
position = -17
score = 5.03892
sequence = AATAATTACTAC

Gene: HCH_00347: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Marinobacter aqueolei

Site:
position = -63
score = 5.0992
sequence = TAAAACTACTAC

Gene: Maqu_1834: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
*
Marinobacter sp. ELB17

Site:
position = -13
score = 5.48761
sequence = TAAAATTACTAC

Gene: MELB17_08908: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1038: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901

Gene: TERTU_2711: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Cellvibrio japonicus Ueda107

Gene: CJA_1350: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2741: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
pgl
 
Hahella chejuensis KCTC 2396

Gene: HCH_00348: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
 
Marinobacter aqueolei

Gene: Maqu_1833: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
 
Marinobacter sp. ELB17

Gene: MELB17_08913: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107

Gene: CJA_1351: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2740: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
eda
 
Hahella chejuensis KCTC 2396

Gene: HCH_00349: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Marinobacter aqueolei

Gene: Maqu_1832: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Marinobacter sp. ELB17

Gene: MELB17_08918: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Oceanobacter sp. RED65

Gene: RED65_10944: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_1039: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107

Gene: CJA_1352: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2739: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Reinekea sp. MED297

Gene: MED297_17977: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Alcanivorax borkumensis SK2
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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