Regulog UxuR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - ExuR/UxuR
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 12 | 4 |
| Psychromonas sp. CNPT3 | 3 | 2 |
| Moritella sp. PE36 | ||
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | ||
| Aeromonas salmonicida subsp. salmonicida A449 | ||
| Tolumonas auensis DSM 9187 | 10 | 4 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| uxuQ |
*
Psychromonas ingrahamii 37 Site: position = -157 score = 4.34097 sequence = TGATTGGTCGACCAACTG Site: position = -191 score = 5.44865 sequence = AAATTGGTTGACCTATAT Site: position = -46 score = 5.1485 sequence = AAATTGGTTAACCGAAAA Gene: Ping_0134: predicted glucuronate TRAP transporter, small subunit |
Gene: PCNPT3_08360: predicted glucuronate TRAP transporter, small subunit |
|
|
|
|
predicted glucuronate TRAP transporter, small subunit |
| uxuM |
Gene: Ping_0133: predicted glucuronate TRAP transporter, large subunit |
Gene: PCNPT3_08355: predicted glucuronate TRAP transporter, large subunit |
|
|
|
|
predicted glucuronate TRAP transporter, large subunit |
| uxuB |
Gene: Ping_0132: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: PCNPT3_08350: D-mannonate oxidoreductase (EC 1.1.1.57) |
|
|
|
Gene: Tola_2883: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxaC |
Gene: Ping_0131: Uronate isomerase (EC 5.3.1.12) |
Gene: PCNPT3_08345: Uronate isomerase (EC 5.3.1.12) |
|
|
|
*2
Tolumonas auensis DSM 9187 Gene: Tola_2882: Uronate isomerase (EC 5.3.1.12) Site: position = -103 score = 4.63904 sequence = TAATTGGTATAACACATT Gene: Tola_3025: Uronate isomerase (EC 5.3.1.12) |
Uronate isomerase (EC 5.3.1.12) |
| kdgK |
Gene: Ping_0130: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
|
|
|
|
|
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| eda |
Gene: Ping_0129: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|
|
|
|
|
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| Ping_0128 |
Gene: Ping_0128: hypothetical protein |
|
|
|
|
|
hypothetical protein |
| ygjV |
Gene: Ping_0127: Conserved hypothetical protein |
|
|
|
|
Gene: Tola_3028: Conserved hypothetical protein |
Conserved hypothetical protein |
| uxaB |
|
|
|
|
|
Gene: Tola_3026: Altronate oxidoreductase |
Altronate oxidoreductase |
| uxaA |
|
|
|
|
|
Gene: Tola_3027: Altronate dehydratase |
Altronate dehydratase |
| uxuA |
Gene: Ping_0136: Mannonate dehydratase (EC 4.2.1.8) |
Gene: PCNPT3_08375: Mannonate dehydratase (EC 4.2.1.8) |
|
|
|
*
Tolumonas auensis DSM 9187 Site: position = -244 score = 4.30516 sequence = CTGCTGGTCAACCAATTG Site: position = -77 score = 5.14262 sequence = ATATTGGTCGACCAGTTG Gene: Tola_2884: Mannonate dehydratase (EC 4.2.1.8) |
Mannonate dehydratase (EC 4.2.1.8) |
| uxuP |
*
Psychromonas ingrahamii 37 Site: position = -145 score = 4.36094 sequence = CAGTTGGTCGACCAATCA Site: position = -111 score = 5.43805 sequence = ATATAGGTCAACCAATTT Site: position = -256 score = 5.31833 sequence = TTTTCGGTTAACCAATTT Gene: Ping_0135: predicted glucuronate TRAP transporter, periplasmic subunit |
*
Psychromonas sp. CNPT3 Site: position = -135 score = 5.95043 sequence = AAATTGGTAAACCAATTA Gene: PCNPT3_08365: predicted glucuronate TRAP transporter, periplasmic subunit |
|
|
|
|
predicted glucuronate TRAP transporter, periplasmic subunit |
| uxuR |
*
Psychromonas ingrahamii 37 Site: position = -42 score = 5.12352 sequence = TTATTGGTTGACCAAAGT Gene: Ping_0138: D-glucuronate repressor, GntR family |
*
Psychromonas sp. CNPT3 Site: position = -61 score = 6.1786 sequence = AAATTGGTAAACCAATTT Gene: PCNPT3_08370: D-glucuronate repressor, GntR family |
|
|
|
*
Tolumonas auensis DSM 9187 Site: position = -66 score = 5.42651 sequence = TTTTTGGTTGACCAATTC Gene: Tola_2887: D-glucuronate repressor, GntR family |
D-glucuronate repressor, GntR family |
| CRON 2. | |||||||
| bglX |
*
Psychromonas ingrahamii 37 Site: position = -199 score = 5.04961 sequence = TAATTGGTTGACCTAATG Site: position = -75 score = 5.68877 sequence = TAATTGGTTAACCAAATG Gene: Ping_0139: Periplasmic beta-glucosidase precursor |
|
|
|
|
|
Periplasmic beta-glucosidase precursor |
| CRON 3. | |||||||
| lfaT |
|
|
|
|
|
*
Tolumonas auensis DSM 9187 Site: position = -226 score = 4.89639 sequence = CAACTGGTCGACCAATAT Site: position = -59 score = 4.36423 sequence = CAATTGGTTGACCAGCAG Gene: Tola_2885: putative hexuronate transporter, MFS family |
putative hexuronate transporter, MFS family |
| lfaA |
|
|
|
|
|
Gene: Tola_2886: Alpha-glucosidase (EC 3.2.1.20) |
Alpha-glucosidase (EC 3.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |