Regulog UxuR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:	Glucuronate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Psychromonadaceae/Aeromonadales
By trascription factor - ExuR/UxuR
By TF family - GntR/Others
By effector - Glucuronate
By pathway - Glucuronate utilization

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37	12	4
Psychromonas sp. CNPT3	3	2
Moritella sp. PE36
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Tolumonas auensis DSM 9187	10	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
uxuQ	* Psychromonas ingrahamii 37 Site: position = -157 score = 4.34097 sequence = TGATTGGTCGACCAACTG Site: position = -191 score = 5.44865 sequence = AAATTGGTTGACCTATAT Site: position = -46 score = 5.1485 sequence = AAATTGGTTAACCGAAAA Gene: Ping_0134: predicted glucuronate TRAP transporter, small subunit	Psychromonas sp. CNPT3 Gene: PCNPT3_08360: predicted glucuronate TRAP transporter, small subunit	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	predicted glucuronate TRAP transporter, small subunit
uxuM	Psychromonas ingrahamii 37 Gene: Ping_0133: predicted glucuronate TRAP transporter, large subunit	Psychromonas sp. CNPT3 Gene: PCNPT3_08355: predicted glucuronate TRAP transporter, large subunit	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	predicted glucuronate TRAP transporter, large subunit
uxuB	Psychromonas ingrahamii 37 Gene: Ping_0132: D-mannonate oxidoreductase (EC 1.1.1.57)	Psychromonas sp. CNPT3 Gene: PCNPT3_08350: D-mannonate oxidoreductase (EC 1.1.1.57)	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_2883: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
uxaC	Psychromonas ingrahamii 37 Gene: Ping_0131: Uronate isomerase (EC 5.3.1.12)	Psychromonas sp. CNPT3 Gene: PCNPT3_08345: Uronate isomerase (EC 5.3.1.12)	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	2 Tolumonas auensis DSM 9187* Gene: Tola_2882: Uronate isomerase (EC 5.3.1.12) Site: position = -103 score = 4.63904 sequence = TAATTGGTATAACACATT Gene: Tola_3025: Uronate isomerase (EC 5.3.1.12)	Uronate isomerase (EC 5.3.1.12)
kdgK	Psychromonas ingrahamii 37 Gene: Ping_0130: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
eda	Psychromonas ingrahamii 37 Gene: Ping_0129: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Ping_0128	Psychromonas ingrahamii 37 Gene: Ping_0128: hypothetical protein	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	hypothetical protein
ygjV	Psychromonas ingrahamii 37 Gene: Ping_0127: Conserved hypothetical protein	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_3028: Conserved hypothetical protein	Conserved hypothetical protein
uxaB	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_3026: Altronate oxidoreductase	Altronate oxidoreductase
uxaA	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_3027: Altronate dehydratase	Altronate dehydratase
uxuA	Psychromonas ingrahamii 37 Gene: Ping_0136: Mannonate dehydratase (EC 4.2.1.8)	Psychromonas sp. CNPT3 Gene: PCNPT3_08375: Mannonate dehydratase (EC 4.2.1.8)	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -244 score = 4.30516 sequence = CTGCTGGTCAACCAATTG Site: position = -77 score = 5.14262 sequence = ATATTGGTCGACCAGTTG Gene: Tola_2884: Mannonate dehydratase (EC 4.2.1.8)	Mannonate dehydratase (EC 4.2.1.8)
uxuP	* Psychromonas ingrahamii 37 Site: position = -145 score = 4.36094 sequence = CAGTTGGTCGACCAATCA Site: position = -111 score = 5.43805 sequence = ATATAGGTCAACCAATTT Site: position = -256 score = 5.31833 sequence = TTTTCGGTTAACCAATTT Gene: Ping_0135: predicted glucuronate TRAP transporter, periplasmic subunit	* Psychromonas sp. CNPT3 Site: position = -135 score = 5.95043 sequence = AAATTGGTAAACCAATTA Gene: PCNPT3_08365: predicted glucuronate TRAP transporter, periplasmic subunit	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	predicted glucuronate TRAP transporter, periplasmic subunit
uxuR	* Psychromonas ingrahamii 37 Site: position = -42 score = 5.12352 sequence = TTATTGGTTGACCAAAGT Gene: Ping_0138: D-glucuronate repressor, GntR family	* Psychromonas sp. CNPT3 Site: position = -61 score = 6.1786 sequence = AAATTGGTAAACCAATTT Gene: PCNPT3_08370: D-glucuronate repressor, GntR family	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -66 score = 5.42651 sequence = TTTTTGGTTGACCAATTC Gene: Tola_2887: D-glucuronate repressor, GntR family	D-glucuronate repressor, GntR family

CRON 2.
bglX	* Psychromonas ingrahamii 37 Site: position = -199 score = 5.04961 sequence = TAATTGGTTGACCTAATG Site: position = -75 score = 5.68877 sequence = TAATTGGTTAACCAAATG Gene: Ping_0139: Periplasmic beta-glucosidase precursor	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Periplasmic beta-glucosidase precursor

CRON 3.
lfaT	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -226 score = 4.89639 sequence = CAACTGGTCGACCAATAT Site: position = -59 score = 4.36423 sequence = CAATTGGTTGACCAGCAG Gene: Tola_2885: putative hexuronate transporter, MFS family	putative hexuronate transporter, MFS family
lfaA	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_2886: Alpha-glucosidase (EC 3.2.1.20)	Alpha-glucosidase (EC 3.2.1.20)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --