Statistics of regulated genes

Genome	Genes	Operons
Sinorhizobium meliloti 1021	4	1
Rhizobium sp. NGR234	4	1
Rhizobium leguminosarum bv. viciae 3841	5	2
Rhizobium etli CFN 42	1	1
Agrobacterium tumefaciens str. C58 (Cereon)	5	2
Mesorhizobium sp. BNC1	5	2
Mesorhizobium loti MAFF303099
Brucella melitensis 16M	2	2
Bartonella quintana str. Toulouse	4	1
Rhodopseudomonas palustris CGA009	2	2
Bradyrhizobium japonicum USDA 110	3	3
Bradyrhizobium sp. BTAi1	3	3
Nitrobacter winogradskyi Nb-255	3	3
Azorhizobium caulinodans ORS 571	1	1
Xanthobacter autotrophicus Py2	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
RPA0472	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA0472: Possible outer membrane protein	* Bradyrhizobium japonicum USDA 110 Site: position = -149 score = 5.31299 sequence = ATTGCGAATTAATCGCAAT Gene: blr0095: Possible outer membrane protein	* Bradyrhizobium sp. BTAi1 Site: position = -161 score = 5.17919 sequence = TTTGCAAATTAATCGCAAT Gene: BBta_7486: Possible outer membrane protein	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0329: Possible outer membrane protein	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Possible outer membrane protein
CRON 2.
mntH	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -69 score = 5.70716 sequence = GTTGCGAATGACTTGCATT Gene: RL0940: Manganese transport protein MntH	* Rhizobium etli CFN 42 Site: position = -68 score = 5.70716 sequence = GTTGCGAATGACTTGCATT Gene: RHE_CH00878: Manganese transport protein MntH	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = 5 score = 5.70716 sequence = TATGAGAATGATTTGCAAT Gene: Atu1736: Manganese transport protein MntH	* Mesorhizobium sp. BNC1 Site: position = -38 score = 5.24552 sequence = AATGCAAATAAGTCGCAAC Gene: Meso_4120: Manganese transport protein MntH	Mesorhizobium loti MAFF303099 Gene: mlr2501: Manganese transport protein MntH	* Brucella melitensis 16M Site: position = -44 score = 5.32606 sequence = AATGCAAATAGTTTGCAAC Gene: BMEI0569: Manganese transport protein MntH	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -47 score = 5.75472 sequence = ATTGCAAATGACTTGCAAG Gene: RPA2706: Manganese transport protein MntH	* Bradyrhizobium japonicum USDA 110 Site: position = -46 score = 5.79845 sequence = GTTGCAAATGAGTTGCAAT Gene: bll5044: Manganese transport protein MntH	* Bradyrhizobium sp. BTAi1 Site: position = -86 score = 5.15001 sequence = CTTGCAAATAAGTTGCATT Gene: BBta_4658: Manganese transport protein MntH	* Nitrobacter winogradskyi Nb-255 Site: position = -53 score = 5.75472 sequence = TTTGCAAATGAGTTGCAAT Gene: Nwi_1912: Manganese transport protein MntH	* Azorhizobium caulinodans ORS 571 Site: position = -83 score = 5.36707 sequence = CTTGCAAATCGTTCGCATT Gene: AZC_3295: Manganese transport protein MntH	Xanthobacter autotrophicus Py2	Manganese transport protein MntH
CRON 3.
sitA	* Sinorhizobium meliloti 1021 Site: position = -80 score = 5.40787 sequence = GTTGCAAATGCTTCTCATT Gene: SMc02509: Manganese ABC transporter, periplasmic-binding protein SitA	* Rhizobium sp. NGR234 Site: position = -82 score = 4.95492 sequence = GTTGCAAATGGTTCTCATG Gene: NGR_c31020: Manganese ABC transporter, periplasmic-binding protein SitA	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -138 score = 4.69739 sequence = GTTGCAATTCATTCTTAAT Site: position = -84 score = 5.40259 sequence = TTTGCAAATCATTCTGAAT Gene: RL3884: Manganese ABC transporter, periplasmic-binding protein SitA	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -79 score = 6.07514 sequence = ATTGAGAATGATTTGCAAT Site: position = -27 score = 4.85711 sequence = ATTGCGAGTTAATCGCAAC Gene: Atu4471: Manganese ABC transporter, periplasmic-binding protein SitA	* Mesorhizobium sp. BNC1 Site: position = -115 score = 5.78788 sequence = GTTGCAAATGGTTTGCAAT Gene: Meso_2853: Manganese ABC transporter, periplasmic-binding protein SitA	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	* Bartonella quintana str. Toulouse Site: position = -33 score = 5.88636 sequence = AATGCAAATCATTGGCAAT Gene: BQ00790: Manganese ABC transporter, periplasmic-binding protein SitA	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	* Xanthobacter autotrophicus Py2 Site: position = -90 score = 5.42669 sequence = AATGCGAATAAGTTGCAAT Site: position = -51 score = 4.84486 sequence = TTTGCAAATGGATCGCAAA Gene: Xaut_1207: Manganese ABC transporter, periplasmic-binding protein SitA	Manganese ABC transporter, periplasmic-binding protein SitA
sitB	Sinorhizobium meliloti 1021 Gene: SMc02508: Manganese ABC transporter, ATP-binding protein SitB	Rhizobium sp. NGR234 Gene: NGR_c31030: Manganese ABC transporter, ATP-binding protein SitB	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3885: Manganese ABC transporter, ATP-binding protein SitB	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4470: Manganese ABC transporter, ATP-binding protein SitB	Mesorhizobium sp. BNC1 Gene: Meso_2852: Manganese ABC transporter, ATP-binding protein SitB	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse Gene: BQ00800: Manganese ABC transporter, ATP-binding protein SitB	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1206: Manganese ABC transporter, ATP-binding protein SitB	Manganese ABC transporter, ATP-binding protein SitB
sitC	Sinorhizobium meliloti 1021 Gene: SMc02507: Manganese ABC transporter, inner membrane permease protein SitC	Rhizobium sp. NGR234 Gene: NGR_c31040: Manganese ABC transporter, inner membrane permease protein SitC	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3886: Manganese ABC transporter, inner membrane permease protein SitC	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4469: Manganese ABC transporter, inner membrane permease protein SitC	Mesorhizobium sp. BNC1 Gene: Meso_2851: Manganese ABC transporter, inner membrane permease protein SitC	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse Gene: BQ00810: Manganese ABC transporter, inner membrane permease protein SitC	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1205: Manganese ABC transporter, inner membrane permease protein SitC	Manganese ABC transporter, inner membrane permease protein SitC
sitD	Sinorhizobium meliloti 1021 Gene: SMc02506: Manganese ABC transporter, inner membrane permease protein SitD	Rhizobium sp. NGR234 Gene: NGR_c31050: Manganese ABC transporter, inner membrane permease protein SitD	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3887: Manganese ABC transporter, inner membrane permease protein SitD	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4468: Manganese ABC transporter, inner membrane permease protein SitD	Mesorhizobium sp. BNC1 Gene: Meso_2850: Manganese ABC transporter, inner membrane permease protein SitD	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse Gene: BQ00820: Manganese ABC transporter, inner membrane permease protein SitD	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2 Gene: Xaut_1204: Manganese ABC transporter, inner membrane permease protein SitD	Manganese ABC transporter, inner membrane permease protein SitD
CRON 4.
Nwi_3051	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	* Nitrobacter winogradskyi Nb-255 Site: position = -64 score = 5.0483 sequence = CTTGCGAGGCATTCGCAAC Gene: Nwi_3051: TonB-dependent receptor	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	TonB-dependent receptor
CRON 5.
irr1	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	* Brucella melitensis 16M Site: position = -200 score = 5.96905 sequence = ATTGCAAACCATTTGCAAT Gene: BMEI1563: Iron-responsive regulator Irr paralog	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -85 score = 4.3378 sequence = GTTGCGAAGCGCTTGCACC Gene: RPA0424: Iron-responsive regulator Irr paralog	* Bradyrhizobium japonicum USDA 110 Site: position = -79 score = 4.33869 sequence = GTTGCGAGAAACTTGCATC Gene: bll0768: Iron-responsive regulator Irr paralog	* Bradyrhizobium sp. BTAi1 Site: position = -76 score = 3.60195 sequence = GTTGCGATAAGCTTGCATC Gene: BBta_0071: Iron-responsive regulator Irr paralog	* Nitrobacter winogradskyi Nb-255 Site: position = -95 score = 4.6134 sequence = GTTGCGAAAAACTTGCATC Gene: Nwi_0035: Iron-responsive regulator Irr paralog	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Iron-responsive regulator Irr paralog

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