Regulog NtrC - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | 3 | 2 |
| Xanthomonas axonopodis pv. citri str. 306 | 3 | 2 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 3 | 2 |
| Stenotrophomonas maltophilia K279a | 3 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| ntrB |
*
Xylella fastidiosa 9a5c Site: position = -17 score = 5.08118 sequence = GGCCCTACATTGGTGCA Gene: XF1849: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -17 score = 6.1731 sequence = TGCACTAAATTGGTGCA Gene: XAC0207: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -23 score = 6.1731 sequence = TGCACTAAATTGGTGCA Gene: XCC0188: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Stenotrophomonas maltophilia K279a Site: position = -17 score = 5.99518 sequence = TGCACTACATTGGTGCA Gene: Smlt0158: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: XF1848: Nitrogen regulation protein NR(I), Fis family |
Gene: XAC0208: Nitrogen regulation protein NR(I), Fis family |
Gene: XCC0189: Nitrogen regulation protein NR(I), Fis family |
Gene: Smlt0159: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 2. | |||||
| glnA |
*
Xylella fastidiosa 9a5c Site: position = -35 score = 5.16967 sequence = TGCACCATATAAGTGCT Gene: XF1842: Glutamine synthetase type I (EC 6.3.1.2) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -172 score = 5.39054 sequence = TGCACCACATCGGTGCG Site: position = -142 score = 5.42667 sequence = TGCACCTCAATAGTGCA Gene: XAC0204: Glutamine synthetase type I (EC 6.3.1.2) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -173 score = 6.06064 sequence = TGCACCATTTTGGTGCA Gene: XCC0185: Glutamine synthetase type I (EC 6.3.1.2) |
*
Stenotrophomonas maltophilia K279a Site: position = -136 score = 5.26081 sequence = TGCACTCGTTTGGTGCG Site: position = -165 score = 5.37308 sequence = TGCACCAAACGGGTGCG Gene: Smlt0151: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |