Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NtrC - Psychromonadaceae/Aeromonadales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Psychromonas ingrahamii 37 3 2
Psychromonas sp. CNPT3 3 2
Moritella sp. PE36 5 3
Aeromonas hydrophila subsp. hydrophila ATCC 7966 5 4
Aeromonas salmonicida subsp. salmonicida A449 8 5
Tolumonas auensis DSM 9187 5 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
amtB2
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -247
score = 5.07304
sequence = TGCGCCAATCTGGTGCG

Gene: AHA_3695: Ammonium transporter
*2
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_3663: Ammonium transporter

Site:
position = -72
score = 4.84721
sequence = TGCTCTATTTCGGTGCG

Gene: ASA_3664: Ammonium transporter
*
Tolumonas auensis DSM 9187

Site:
position = -234
score = 4.88544
sequence = CGCACCAAATAAGTACA

Gene: Tola_0512: Ammonium transporter
Ammonium transporter
 
CRON 2.
glnK
*
Psychromonas ingrahamii 37

Site:
position = -175
score = 5.38623
sequence = TGCACTTTTTTGGTGCA

Gene: Ping_3026: Nitrogen regulatory protein P-II
*
Psychromonas sp. CNPT3

Site:
position = -127
score = 4.98478
sequence = TGCACTAAGGTGGTGCG

Gene: PCNPT3_12313: Nitrogen regulatory protein P-II
*
Moritella sp. PE36

Site:
position = -143
score = 4.95246
sequence = CGCACTGTTTTGGTGCT

Gene: PE36_23757: Nitrogen regulatory protein P-II
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -164
score = 5.04105
sequence = TGCACCAATGAGGGGCA

Gene: ASA_4013: Nitrogen regulatory protein P-II
 
Tolumonas auensis DSM 9187
Nitrogen regulatory protein P-II
amtB
 
Psychromonas ingrahamii 37

Gene: Ping_3025: Ammonium transporter
 
Psychromonas sp. CNPT3

Gene: PCNPT3_12308: Ammonium transporter
 
Moritella sp. PE36

Gene: PE36_23752: Ammonium transporter
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_4014: Ammonium transporter
 
Tolumonas auensis DSM 9187
Ammonium transporter
 
CRON 3.
glnK2
 
Psychromonas ingrahamii 37
 
Psychromonas sp. CNPT3
 
Moritella sp. PE36
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -194
score = 4.90449
sequence = TGCTCTTGTTTGGTGCA

Gene: AHA_0649: Nitrogen regulatory protein P-II
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -194
score = 4.90449
sequence = TGCTCTTGTTTGGTGCA

Gene: ASA_0649: Nitrogen regulatory protein P-II
*
Tolumonas auensis DSM 9187

Site:
position = -181
score = 4.66027
sequence = CGCCCCTTTTTGGGGCG

Gene: Tola_2560: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
 
CRON 4.
ntrB
 
Psychromonas ingrahamii 37

Gene: Ping_3487: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Psychromonas sp. CNPT3

Gene: PCNPT3_02275: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Moritella sp. PE36

Site:
position = -60
score = 5.61469
sequence = AGCACCAAATTGGTGCG

Gene: PE36_16024: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -52
score = 5.65537
sequence = TGCACCACATTGGTGCA

Gene: AHA_0275: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -52
score = 5.23734
sequence = TGCACCACGTTGGTGCA

Gene: ASA_4122: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
*
Tolumonas auensis DSM 9187

Site:
position = -40
score = 4.98482
sequence = AGCACCGGATTGGTGCG

Gene: Tola_0457: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Psychromonas ingrahamii 37

Gene: Ping_3488: Nitrogen regulation protein NR(I), Fis family
 
Psychromonas sp. CNPT3

Gene: PCNPT3_02270: Nitrogen regulation protein NR(I), Fis family
 
Moritella sp. PE36

Gene: PE36_16019: Nitrogen regulation protein NR(I), Fis family
 
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Gene: AHA_0274: Nitrogen regulation protein NR(I), Fis family
 
Aeromonas salmonicida subsp. salmonicida A449

Gene: ASA_4123: Nitrogen regulation protein NR(I), Fis family
 
Tolumonas auensis DSM 9187

Gene: Tola_0456: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
 
CRON 5.
glnA
*
Psychromonas ingrahamii 37

Site:
position = -161
score = 5.09365
sequence = CGCACCATAATAGAGCA

Site:
position = -182
score = 4.82684
sequence = CGCACCAAGCTGGAGCA

Gene: Ping_3484: Glutamine synthetase type I (EC 6.3.1.2)
*
Psychromonas sp. CNPT3

Site:
position = -163
score = 4.19601
sequence = AGCACCATTTATGCGCA

Site:
position = -142
score = 5.33353
sequence = AGCACCTAAATGGTGCA

Gene: PCNPT3_02285: Glutamine synthetase type I (EC 6.3.1.2)
*
Moritella sp. PE36

Site:
position = -195
score = 5.46202
sequence = CGCACCACTATGGTGCA

Gene: PE36_16034: Glutamine synthetase type I (EC 6.3.1.2)
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966

Site:
position = -163
score = 4.3413
sequence = TGCACTACTTTGAGGCG

Site:
position = -197
score = 5.54853
sequence = CGCACCATTTTAGTGCA

Gene: AHA_0277: Glutamine synthetase type I (EC 6.3.1.2)
*
Aeromonas salmonicida subsp. salmonicida A449

Site:
position = -197
score = 5.54853
sequence = CGCACCATTTTAGTGCA

Site:
position = -163
score = 4.3413
sequence = TGCACTACTTTGAGGCG

Gene: ASA_4120: Glutamine synthetase type I (EC 6.3.1.2)
*
Tolumonas auensis DSM 9187

Site:
position = -160
score = 4.27501
sequence = TGCACCATAATATTACA

Site:
position = -181
score = 5.43662
sequence = CGCACCAAATTAGTGCT

Gene: Tola_0459: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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