Regulog NtrC - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 3 | 2 |
| Psychromonas sp. CNPT3 | 3 | 2 |
| Moritella sp. PE36 | 5 | 3 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 5 | 4 |
| Aeromonas salmonicida subsp. salmonicida A449 | 8 | 5 |
| Tolumonas auensis DSM 9187 | 5 | 4 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| amtB2 |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -247 score = 5.07304 sequence = TGCGCCAATCTGGTGCG Gene: AHA_3695: Ammonium transporter |
*2
Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3663: Ammonium transporter Site: position = -72 score = 4.84721 sequence = TGCTCTATTTCGGTGCG Gene: ASA_3664: Ammonium transporter |
*
Tolumonas auensis DSM 9187 Site: position = -234 score = 4.88544 sequence = CGCACCAAATAAGTACA Gene: Tola_0512: Ammonium transporter |
Ammonium transporter |
| CRON 2. | |||||||
| glnK |
*
Psychromonas ingrahamii 37 Site: position = -175 score = 5.38623 sequence = TGCACTTTTTTGGTGCA Gene: Ping_3026: Nitrogen regulatory protein P-II |
*
Psychromonas sp. CNPT3 Site: position = -127 score = 4.98478 sequence = TGCACTAAGGTGGTGCG Gene: PCNPT3_12313: Nitrogen regulatory protein P-II |
*
Moritella sp. PE36 Site: position = -143 score = 4.95246 sequence = CGCACTGTTTTGGTGCT Gene: PE36_23757: Nitrogen regulatory protein P-II |
|
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -164 score = 5.04105 sequence = TGCACCAATGAGGGGCA Gene: ASA_4013: Nitrogen regulatory protein P-II |
|
Nitrogen regulatory protein P-II |
| amtB |
Gene: Ping_3025: Ammonium transporter |
Gene: PCNPT3_12308: Ammonium transporter |
Gene: PE36_23752: Ammonium transporter |
|
Gene: ASA_4014: Ammonium transporter |
|
Ammonium transporter |
| CRON 3. | |||||||
| glnK2 |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -194 score = 4.90449 sequence = TGCTCTTGTTTGGTGCA Gene: AHA_0649: Nitrogen regulatory protein P-II |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -194 score = 4.90449 sequence = TGCTCTTGTTTGGTGCA Gene: ASA_0649: Nitrogen regulatory protein P-II |
*
Tolumonas auensis DSM 9187 Site: position = -181 score = 4.66027 sequence = CGCCCCTTTTTGGGGCG Gene: Tola_2560: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| CRON 4. | |||||||
| ntrB |
Gene: Ping_3487: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: PCNPT3_02275: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Moritella sp. PE36 Site: position = -60 score = 5.61469 sequence = AGCACCAAATTGGTGCG Gene: PE36_16024: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -52 score = 5.65537 sequence = TGCACCACATTGGTGCA Gene: AHA_0275: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -52 score = 5.23734 sequence = TGCACCACGTTGGTGCA Gene: ASA_4122: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Tolumonas auensis DSM 9187 Site: position = -40 score = 4.98482 sequence = AGCACCGGATTGGTGCG Gene: Tola_0457: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: Ping_3488: Nitrogen regulation protein NR(I), Fis family |
Gene: PCNPT3_02270: Nitrogen regulation protein NR(I), Fis family |
Gene: PE36_16019: Nitrogen regulation protein NR(I), Fis family |
Gene: AHA_0274: Nitrogen regulation protein NR(I), Fis family |
Gene: ASA_4123: Nitrogen regulation protein NR(I), Fis family |
Gene: Tola_0456: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 5. | |||||||
| glnA |
*
Psychromonas ingrahamii 37 Site: position = -161 score = 5.09365 sequence = CGCACCATAATAGAGCA Site: position = -182 score = 4.82684 sequence = CGCACCAAGCTGGAGCA Gene: Ping_3484: Glutamine synthetase type I (EC 6.3.1.2) |
*
Psychromonas sp. CNPT3 Site: position = -163 score = 4.19601 sequence = AGCACCATTTATGCGCA Site: position = -142 score = 5.33353 sequence = AGCACCTAAATGGTGCA Gene: PCNPT3_02285: Glutamine synthetase type I (EC 6.3.1.2) |
*
Moritella sp. PE36 Site: position = -195 score = 5.46202 sequence = CGCACCACTATGGTGCA Gene: PE36_16034: Glutamine synthetase type I (EC 6.3.1.2) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -163 score = 4.3413 sequence = TGCACTACTTTGAGGCG Site: position = -197 score = 5.54853 sequence = CGCACCATTTTAGTGCA Gene: AHA_0277: Glutamine synthetase type I (EC 6.3.1.2) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -197 score = 5.54853 sequence = CGCACCATTTTAGTGCA Site: position = -163 score = 4.3413 sequence = TGCACTACTTTGAGGCG Gene: ASA_4120: Glutamine synthetase type I (EC 6.3.1.2) |
*
Tolumonas auensis DSM 9187 Site: position = -160 score = 4.27501 sequence = TGCACCATAATATTACA Site: position = -181 score = 5.43662 sequence = CGCACCAAATTAGTGCT Gene: Tola_0459: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |