Regulog GlcC - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Glycolate utilization
Effector:	Glycolate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - GlcC
By TF family - GntR/Others
By effector - Glycolate
By pathway - Glycolate utilization

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222	3	1
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Sulfitobacter sp. EE-36
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
glcD	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1020: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	* Paracoccus denitrificans PD1222 Site: position = -71 score = 6.09976 sequence = ATGTGGTCTGAAAATTATACCAAGA Gene: Pden_4399: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Jannaschia sp. CCS1 Gene: Jann_0690: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Rhodobacterales bacterium HTCC2654 Gene: RB2654_17716: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Oceanicola granulosus HTCC2516 Gene: OG2516_16881: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Loktanella vestfoldensis SKA53 Gene: SKA53_15141: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Oceanicola batsensis HTCC2597 Gene: OB2597_12136: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Roseovarius nubinhibens ISM Gene: ISM_09030: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Roseovarius sp. 217 Gene: ROS217_09005: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Sulfitobacter sp. EE-36 Gene: EE36_08128: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Silicibacter TM1040 Gene: TM1040_2502: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Silicibacter pomeroyi DSS-3 Gene: SPO3478: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Roseobacter sp. MED193 Gene: MED193_15702: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1019: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Paracoccus denitrificans PD1222 Gene: Pden_4398: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Jannaschia sp. CCS1 Gene: Jann_0691: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Rhodobacterales bacterium HTCC2654 Gene: RB2654_17721: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Oceanicola granulosus HTCC2516 Gene: OG2516_16876: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Loktanella vestfoldensis SKA53 Gene: SKA53_15136: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Oceanicola batsensis HTCC2597 Gene: OB2597_12141: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Roseovarius nubinhibens ISM Gene: ISM_09025: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Roseovarius sp. 217 Gene: ROS217_09000: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Sulfitobacter sp. EE-36 Gene: EE36_08133: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Silicibacter TM1040 Gene: TM1040_2501: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Silicibacter pomeroyi DSS-3 Gene: SPO3479: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Roseobacter sp. MED193 Gene: MED193_15707: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1018: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Paracoccus denitrificans PD1222 Gene: Pden_4397: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Jannaschia sp. CCS1 Gene: Jann_0693: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Rhodobacterales bacterium HTCC2654 Gene: RB2654_17726: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Oceanicola granulosus HTCC2516 Gene: OG2516_16871: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Loktanella vestfoldensis SKA53 Gene: SKA53_15131: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Oceanicola batsensis HTCC2597 Gene: OB2597_12151: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Roseovarius nubinhibens ISM Gene: ISM_09020: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Roseovarius sp. 217 Gene: ROS217_08995: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Sulfitobacter sp. EE-36 Gene: EE36_08143: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Silicibacter TM1040 Gene: TM1040_2500: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Silicibacter pomeroyi DSS-3 Gene: SPO3480: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Roseobacter sp. MED193 Gene: MED193_15712: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GlcC - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --