Regulog NagQ - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NagQ
- By taxonomy - Rhodobacterales
- By TF family - GntR/Others
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | ||
| Paracoccus denitrificans PD1222 | 9 | 2 |
| Jannaschia sp. CCS1 | 9 | 2 |
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | 10 | 2 |
| Silicibacter pomeroyi DSS-3 | 10 | 2 |
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| murQ |
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Paracoccus denitrificans PD1222 Site: position = -132 score = -1.99069 sequence = GATACCAAAACAATACCA Gene: Pden_2473: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Jannaschia sp. CCS1 Site: position = -146 score = -1.57944 sequence = AAAGCCAATACAATACCA Gene: Jann_1357: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Silicibacter TM1040 Site: position = -211 score = -1.75932 sequence = AATACCATTACGATACCA Gene: TM1040_3152: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Silicibacter pomeroyi DSS-3 Site: position = -156 score = 0.173122 sequence = AATACCTTTATAATACCT Gene: SPO1840: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
| nagT |
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Gene: Pden_2472: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
Gene: Jann_1356: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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Gene: TM1040_3153: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
Gene: SPO1839: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
| nagU |
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Gene: Pden_2471: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
Gene: Jann_1355: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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Gene: OG2516_18735: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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Gene: TM1040_3154: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
Gene: SPO1838: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
| nagV |
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Gene: Pden_2470: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
Gene: Jann_1354: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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Gene: TM1040_3155: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
Gene: SPO1837: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
| nagD |
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Gene: Pden_2957: Hypothetical oxidoreductase related to N-acetylglucosamine utilization |
Gene: Jann_1469: Hypothetical oxidoreductase related to N-acetylglucosamine utilization |
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Gene: OG2516_04968: Hypothetical oxidoreductase related to N-acetylglucosamine utilization |
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Gene: TM1040_3156: Hypothetical oxidoreductase related to N-acetylglucosamine utilization |
Gene: SPO1836: Hypothetical oxidoreductase related to N-acetylglucosamine utilization |
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Hypothetical oxidoreductase related to N-acetylglucosamine utilization |
| nagW |
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Gene: Pden_2469: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein |
Gene: Jann_1353: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein |
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Gene: TM1040_3157: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein |
Gene: SPO1835: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein |
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N-Acetyl-D-glucosamine ABC transport system ATP-binding protein |
| CRON 2. | ||||||||||||||||
| nagK |
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Paracoccus denitrificans PD1222 Site: position = -38 score = 6.2813 sequence = TGGTATTGTTTTGGTATC Gene: Pden_2474: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Jannaschia sp. CCS1 Site: position = -100 score = 0.12517 sequence = GATACCTTTTTAATACCT Gene: Jann_1358: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Gene: EE36_09235: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Silicibacter TM1040 Site: position = -21 score = 5.71379 sequence = TGGTATCGTAATGGTATT Gene: TM1040_3151: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Silicibacter pomeroyi DSS-3 Site: position = -21 score = 5.41132 sequence = AGGTATTATAAAGGTATT Gene: SPO1841: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
Gene: MED193_17289: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
| nagQ |
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Gene: Pden_2475: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: Jann_1359: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Gene: OG2516_15399: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Gene: TM1040_3150: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: SPO1842: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
| nagB2 |
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Gene: Pden_2476: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Jann_1360: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
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Gene: TM1040_3149: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: SPO1843: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
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Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
| nagA |
Gene: RSP_1296: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Pden_2477: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Jann_1361: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: EE36_09230: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: TM1040_3148: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: SPO1844: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: MED193_17284: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |