Regulog NagQ - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By trascription factor - NagQ
By taxonomy - Rhodobacterales
By TF family - GntR/Others
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222	9	2
Jannaschia sp. CCS1	9	2
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Sulfitobacter sp. EE-36
Silicibacter TM1040	10	2
Silicibacter pomeroyi DSS-3	10	2
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
murQ	Rhodobacter sphaeroides 2.4.1	* Paracoccus denitrificans PD1222 Site: position = -132 score = -1.99069 sequence = GATACCAAAACAATACCA Gene: Pden_2473: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	* Jannaschia sp. CCS1 Site: position = -146 score = -1.57944 sequence = AAAGCCAATACAATACCA Gene: Jann_1357: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	* Silicibacter TM1040 Site: position = -211 score = -1.75932 sequence = AATACCATTACGATACCA Gene: TM1040_3152: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	* Silicibacter pomeroyi DSS-3 Site: position = -156 score = 0.173122 sequence = AATACCTTTATAATACCT Gene: SPO1840: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
nagT	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2472: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Jannaschia sp. CCS1 Gene: Jann_1356: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3153: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Silicibacter pomeroyi DSS-3 Gene: SPO1839: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
nagU	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2471: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Jannaschia sp. CCS1 Gene: Jann_1355: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_18735: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3154: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Silicibacter pomeroyi DSS-3 Gene: SPO1838: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-Acetyl-D-glucosamine ABC transport system, permease protein 1
nagV	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2470: N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Jannaschia sp. CCS1 Gene: Jann_1354: N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3155: N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Silicibacter pomeroyi DSS-3 Gene: SPO1837: N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-Acetyl-D-glucosamine ABC transport system, permease protein 2
nagD	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2957: Hypothetical oxidoreductase related to N-acetylglucosamine utilization	Jannaschia sp. CCS1 Gene: Jann_1469: Hypothetical oxidoreductase related to N-acetylglucosamine utilization	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_04968: Hypothetical oxidoreductase related to N-acetylglucosamine utilization	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3156: Hypothetical oxidoreductase related to N-acetylglucosamine utilization	Silicibacter pomeroyi DSS-3 Gene: SPO1836: Hypothetical oxidoreductase related to N-acetylglucosamine utilization	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Hypothetical oxidoreductase related to N-acetylglucosamine utilization
nagW	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2469: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein	Jannaschia sp. CCS1 Gene: Jann_1353: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3157: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein	Silicibacter pomeroyi DSS-3 Gene: SPO1835: N-Acetyl-D-glucosamine ABC transport system ATP-binding protein	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-Acetyl-D-glucosamine ABC transport system ATP-binding protein

CRON 2.
nagK	Rhodobacter sphaeroides 2.4.1	* Paracoccus denitrificans PD1222 Site: position = -38 score = 6.2813 sequence = TGGTATTGTTTTGGTATC Gene: Pden_2474: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Jannaschia sp. CCS1 Site: position = -100 score = 0.12517 sequence = GATACCTTTTTAATACCT Gene: Jann_1358: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_09235: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Silicibacter TM1040 Site: position = -21 score = 5.71379 sequence = TGGTATCGTAATGGTATT Gene: TM1040_3151: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	* Silicibacter pomeroyi DSS-3 Site: position = -21 score = 5.41132 sequence = AGGTATTATAAAGGTATT Gene: SPO1841: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Roseobacter sp. MED193 Gene: MED193_17289: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagQ	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2475: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Jannaschia sp. CCS1 Gene: Jann_1359: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516 Gene: OG2516_15399: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3150: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Silicibacter pomeroyi DSS-3 Gene: SPO1842: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
nagB2	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2476: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Jannaschia sp. CCS1 Gene: Jann_1360: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3149: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Silicibacter pomeroyi DSS-3 Gene: SPO1843: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_1296: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Paracoccus denitrificans PD1222 Gene: Pden_2477: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Jannaschia sp. CCS1 Gene: Jann_1361: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_09230: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Silicibacter TM1040 Gene: TM1040_3148: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Silicibacter pomeroyi DSS-3 Gene: SPO1844: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Roseobacter sp. MED193 Gene: MED193_17284: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NagQ - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --