Regulog HypR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia sp. 383 | ||
| Burkholderia cepacia AMMD | 2 | 2 |
| Burkholderia vietnamiensis G4 | 2 | 2 |
| Burkholderia glumae BGR1 | 1 | 1 |
| Burkholderia xenovorans LB400 | ||
| Burkholderia phymatum STM815 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| hypD |
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Burkholderia cepacia AMMD Site: position = -207 score = 4.94466 sequence = ATTGTATAAAAT Gene: Bamb_6107: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Burkholderia vietnamiensis G4 Site: position = -205 score = 4.94466 sequence = ATTGTATAAAAT Gene: Bcep1808_6576: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Burkholderia glumae BGR1 Site: position = -109 score = 5.32149 sequence = ATTGTATACAAT Gene: bglu_2g02840: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
| CRON 2. | |||||||||
| hypR |
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Burkholderia cepacia AMMD Site: position = -74 score = 4.16045 sequence = ATTGTAGAAAAT Gene: Bamb_6120: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Burkholderia vietnamiensis G4 Site: position = -73 score = 3.4672 sequence = ATCGTAGAAAAT Gene: Bcep1808_6574: Predicted regulator for proline and hydrohyproline utilization, GntR family |
Gene: bglu_2g02850: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |