Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog HypR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383
Burkholderia cepacia AMMD 2 2
Burkholderia vietnamiensis G4 2 2
Burkholderia glumae BGR1 1 1
Burkholderia xenovorans LB400
Burkholderia phymatum STM815
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hypD
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
*
Burkholderia cepacia AMMD

Site:
position = -207
score = 4.94466
sequence = ATTGTATAAAAT

Gene: Bamb_6107: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
*
Burkholderia vietnamiensis G4

Site:
position = -205
score = 4.94466
sequence = ATTGTATAAAAT

Gene: Bcep1808_6576: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
*
Burkholderia glumae BGR1

Site:
position = -109
score = 5.32149
sequence = ATTGTATACAAT

Gene: bglu_2g02840: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
 
CRON 2.
hypR
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
*
Burkholderia cepacia AMMD

Site:
position = -74
score = 4.16045
sequence = ATTGTAGAAAAT

Gene: Bamb_6120: Predicted regulator for proline and hydrohyproline utilization, GntR family
*
Burkholderia vietnamiensis G4

Site:
position = -73
score = 3.4672
sequence = ATCGTAGAAAAT

Gene: Bcep1808_6574: Predicted regulator for proline and hydrohyproline utilization, GntR family
 
Burkholderia glumae BGR1

Gene: bglu_2g02850: Predicted regulator for proline and hydrohyproline utilization, GntR family
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Predicted regulator for proline and hydrohyproline utilization, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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