Regulog HypR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 3 | 2 |
| Psychromonas sp. CNPT3 | ||
| Moritella sp. PE36 | ||
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 3 | 2 |
| Aeromonas salmonicida subsp. salmonicida A449 | 3 | 2 |
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| putA |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -78 score = 4.86675 sequence = ATTGTATACATT Site: position = -205 score = 5.18774 sequence = ATTGTATACAAA Gene: AHA_0776: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -204 score = 5.18774 sequence = ATTGTATACAAA Site: position = -77 score = 4.86675 sequence = ATTGTATACATT Gene: ASA_0767: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
| CRON 2. | |||||||
| hypY |
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Psychromonas ingrahamii 37 Site: position = -84 score = 4.25515 sequence = ATTGGATCCAAT Gene: Ping_2117: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| hypS |
Gene: Ping_2116: Putative L-lactate/Malate dehydrogenase |
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Putative L-lactate/Malate dehydrogenase |
| CRON 3. | |||||||
| hypR |
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Psychromonas ingrahamii 37 Site: position = -107 score = 4.25515 sequence = ATTGGATCCAAT Gene: Ping_2118: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -47 score = 4.35958 sequence = ACTTTATACAAT Gene: AHA_0564: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -47 score = 4.35958 sequence = ACTTTATACAAT Gene: ASA_3770: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| ampP |
Gene: Ping_2545: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
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Gene: PE36_24013: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
Gene: AHA_0563: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
Gene: ASA_3769: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
Gene: Tola_3002: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
Xaa-Pro aminopeptidase (EC 3.4.11.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |