Regulog HypR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | ||
| Ralstonia pickettii 12J | ||
| Ralstonia metallidurans CH34 | 4 | 2 |
| Ralstonia eutropha JMP134 | ||
| Ralstonia eutropha H16 | ||
| Cupriavidus taiwanensis |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| COG2271 (UhpC) |
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Ralstonia metallidurans CH34 Site: position = -84 score = 4.22716 sequence = GTTGTATAAAAT Gene: Rmet_5098: Transporter, MFS superfamily |
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Transporter, MFS superfamily |
| CRON 2. | |||||||
| hypD |
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Ralstonia metallidurans CH34 Site: position = -117 score = 4.94466 sequence = ATTTTATACAAT Gene: Rmet_5097: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
| hypH-related(2), COG1012 (PutA) |
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Gene: Rmet_5096: Putative ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Putative ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
| hypS |
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Gene: Rmet_5095: Putative L-lactate/Malate dehydrogenase |
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Putative L-lactate/Malate dehydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |