Regulog NorR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NorR
- By TF family - Fis
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | 4 | 3 |
| Comamonas testosteroni KF-1 | 2 | 2 |
| Delftia acidovorans SPH-1 | 2 | 2 |
| Polaromonas naphthalenivorans CJ2 | 2 | 2 |
| Polaromonas sp. JS666 | 2 | 2 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 2 | 2 |
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| norR |
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*2
Acidovorax sp. JS42 Site: position = -21 score = 4.88091 sequence = TAAGGTAAAAATTACCTTT Site: position = -1 score = 5.16977 sequence = AATGGTAGTTATGACCATA Gene: Ajs_0093: anaerobic nitric oxide reductase transcription regulator, Fis family Gene: Ajs_1896: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Comamonas testosteroni KF-1 Site: position = -56 score = 4.09079 sequence = ATGCGTCAATATGACATTG Site: position = -31 score = 3.89666 sequence = TGCTGTCTTTTTGACACCT Site: position = -10 score = 4.05082 sequence = CGCTGTCGTTATGACAACT Gene: CtesDRAFT_3303: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Delftia acidovorans SPH-1 Site: position = -56 score = 4.30526 sequence = ATGCGTCAATATGACCTTC Site: position = -10 score = 4.28963 sequence = CGCAGTCTTTATGACCACA Gene: Daci_1078: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Polaromonas naphthalenivorans CJ2 Site: position = -232 score = 4.39042 sequence = GACGGTGGATTTGACGATG Gene: Pnap_1305: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Polaromonas sp. JS666 Site: position = -226 score = 4.64851 sequence = TACGGTGGATTTGACGATG Gene: Bpro_3407: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Variovorax paradoxus S110 Site: position = -10 score = 4.53063 sequence = TGTTGTATTTATGACCACA Site: position = 11 score = 4.28096 sequence = CAGTGTCAGTTCGACCACA Gene: Vapar_6323: anaerobic nitric oxide reductase transcription regulator, Fis family |
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anaerobic nitric oxide reductase transcription regulator, Fis family |
| CRON 2. | ||||||||||||
| norB |
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*
Acidovorax sp. JS42 Site: position = -155 score = 5.16977 sequence = TATGGTCATAACTACCATT Site: position = -135 score = 4.88091 sequence = AAAGGTAATTTTTACCTTA Site: position = -110 score = 3.92905 sequence = TACGGTTCATTTTACCCAT Gene: Ajs_0092: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
| Ajs_0091 |
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Gene: Ajs_0091: Conserved protein |
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Conserved protein |
| CRON 3. | ||||||||||||
| hmp |
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*
Acidovorax sp. JS42 Site: position = -114 score = 3.83272 sequence = AAGAGTCTTTTTGACTACT Gene: Ajs_1895: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Comamonas testosteroni KF-1 Site: position = -122 score = 4.09079 sequence = CAATGTCATATTGACGCAT Site: position = -147 score = 3.89666 sequence = AGGTGTCAAAAAGACAGCA Site: position = -168 score = 4.05082 sequence = AGTTGTCATAACGACAGCG Gene: CtesDRAFT_3302: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Delftia acidovorans SPH-1 Site: position = -129 score = 4.28963 sequence = TGTGGTCATAAAGACTGCG Site: position = -83 score = 4.30526 sequence = GAAGGTCATATTGACGCAT Gene: Daci_1079: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Polaromonas naphthalenivorans CJ2 Site: position = 23 score = 4.39042 sequence = CATCGTCAAATCCACCGTC Gene: Pnap_1304: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Polaromonas sp. JS666 Site: position = 23 score = 4.64851 sequence = CATCGTCAAATCCACCGTA Gene: Bpro_3408: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Variovorax paradoxus S110 Site: position = -121 score = 3.82418 sequence = TGTTGCGAATTTGACCACG Site: position = -147 score = 4.53063 sequence = TGTGGTCATAAATACAACA Site: position = -168 score = 4.28096 sequence = TGTGGTCGAACTGACACTG Gene: Vapar_6324: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |