Statistics of regulated genes

Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42	4	3
Comamonas testosteroni KF-1	2	2
Delftia acidovorans SPH-1	2	2
Polaromonas naphthalenivorans CJ2	2	2
Polaromonas sp. JS666	2	2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	2	2
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes												Function
CRON 1.
norR	Acidovorax avenae subsp. citrulli AAC00-1	*2 Acidovorax sp. JS42 Site: position = -21 score = 4.88091 sequence = TAAGGTAAAAATTACCTTT Site: position = -1 score = 5.16977 sequence = AATGGTAGTTATGACCATA Gene: Ajs_0093: anaerobic nitric oxide reductase transcription regulator, Fis family Gene: Ajs_1896: anaerobic nitric oxide reductase transcription regulator, Fis family	* Comamonas testosteroni KF-1 Site: position = -56 score = 4.09079 sequence = ATGCGTCAATATGACATTG Site: position = -31 score = 3.89666 sequence = TGCTGTCTTTTTGACACCT Site: position = -10 score = 4.05082 sequence = CGCTGTCGTTATGACAACT Gene: CtesDRAFT_3303: anaerobic nitric oxide reductase transcription regulator, Fis family	* Delftia acidovorans SPH-1 Site: position = -56 score = 4.30526 sequence = ATGCGTCAATATGACCTTC Site: position = -10 score = 4.28963 sequence = CGCAGTCTTTATGACCACA Gene: Daci_1078: anaerobic nitric oxide reductase transcription regulator, Fis family	* Polaromonas naphthalenivorans CJ2 Site: position = -232 score = 4.39042 sequence = GACGGTGGATTTGACGATG Gene: Pnap_1305: anaerobic nitric oxide reductase transcription regulator, Fis family	* Polaromonas sp. JS666 Site: position = -226 score = 4.64851 sequence = TACGGTGGATTTGACGATG Gene: Bpro_3407: anaerobic nitric oxide reductase transcription regulator, Fis family	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -10 score = 4.53063 sequence = TGTTGTATTTATGACCACA Site: position = 11 score = 4.28096 sequence = CAGTGTCAGTTCGACCACA Gene: Vapar_6323: anaerobic nitric oxide reductase transcription regulator, Fis family	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	anaerobic nitric oxide reductase transcription regulator, Fis family
CRON 2.
norB	Acidovorax avenae subsp. citrulli AAC00-1	* Acidovorax sp. JS42 Site: position = -155 score = 5.16977 sequence = TATGGTCATAACTACCATT Site: position = -135 score = 4.88091 sequence = AAAGGTAATTTTTACCTTA Site: position = -110 score = 3.92905 sequence = TACGGTTCATTTTACCCAT Gene: Ajs_0092: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
Ajs_0091	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_0091: Conserved protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Conserved protein
CRON 3.
hmp	Acidovorax avenae subsp. citrulli AAC00-1	* Acidovorax sp. JS42 Site: position = -114 score = 3.83272 sequence = AAGAGTCTTTTTGACTACT Gene: Ajs_1895: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	* Comamonas testosteroni KF-1 Site: position = -122 score = 4.09079 sequence = CAATGTCATATTGACGCAT Site: position = -147 score = 3.89666 sequence = AGGTGTCAAAAAGACAGCA Site: position = -168 score = 4.05082 sequence = AGTTGTCATAACGACAGCG Gene: CtesDRAFT_3302: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	* Delftia acidovorans SPH-1 Site: position = -129 score = 4.28963 sequence = TGTGGTCATAAAGACTGCG Site: position = -83 score = 4.30526 sequence = GAAGGTCATATTGACGCAT Gene: Daci_1079: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	* Polaromonas naphthalenivorans CJ2 Site: position = 23 score = 4.39042 sequence = CATCGTCAAATCCACCGTC Gene: Pnap_1304: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	* Polaromonas sp. JS666 Site: position = 23 score = 4.64851 sequence = CATCGTCAAATCCACCGTA Gene: Bpro_3408: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -121 score = 3.82418 sequence = TGTTGCGAATTTGACCACG Site: position = -147 score = 4.53063 sequence = TGTGGTCATAAATACAACA Site: position = -168 score = 4.28096 sequence = TGTGGTCGAACTGACACTG Gene: Vapar_6324: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)

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