Regulog NorR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NorR
- By taxonomy - Pseudomonadaceae
- By TF family - Fis
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 4 | 2 |
| Pseudomonas entomophila L48 | 3 | 3 |
| Pseudomonas putida KT2440 | 3 | 3 |
| Pseudomonas syringae pv. tomato str. DC3000 | ||
| Pseudomonas fluorescens Pf-5 | 4 | 3 |
| Pseudomonas mendocina ymp | 4 | 2 |
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP | 2 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| hmp |
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Pseudomonas aeruginosa PAO1 Site: position = -118 score = 4.988 sequence = TGCAGTCATTATGACCTAT Site: position = -163 score = 4.39231 sequence = GGTGGTCATTTCGACCTCT Site: position = -143 score = 5.24862 sequence = TGCAGTCCTAATGACTCTG Gene: PA2664: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Pseudomonas entomophila L48 Site: position = -164 score = 5.24268 sequence = TGCAGTCATATGGACTCCT Site: position = -145 score = 4.16508 sequence = GTTGGTCGGAATGACTATA Site: position = -119 score = 4.45606 sequence = GTGTGTCCTTATGACACCG Gene: PSEEN0952: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Pseudomonas putida KT2440 Site: position = -145 score = 4.52831 sequence = ATGGGTCGATATGACTATA Site: position = -164 score = 5.30459 sequence = TGTAGTCATATGGACTCCT Gene: PP0808: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -165 score = 5.86012 sequence = TGCAGTCATAATGACTCCA Site: position = -146 score = 5.31487 sequence = TGGTGTCTTAATGACTATA Site: position = -120 score = 4.89713 sequence = GAGTGTCTTTATGACTATA Gene: PFL_5040: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Pseudomonas mendocina ymp Site: position = -156 score = 4.86507 sequence = GCGAGTCATTAAGACAACA Site: position = -201 score = 4.89668 sequence = AGCGGTCATTTCGACTACT Site: position = -182 score = 4.61013 sequence = CAAAGTCTTTATGACTCAC Gene: Pmen_3580: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: PST_3121: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Azotobacter vinelandii AvOP Site: position = -178 score = 4.27214 sequence = TGTAGTCATTCGGATAACG Site: position = -159 score = 4.99283 sequence = AGCAGTCTTATTGACAACG Site: position = -134 score = 4.98232 sequence = CGTAGTCGAAACGACTGCA Gene: Avin_51090: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| PA2663 |
Gene: PA2663: hypothetical protein |
|
|
|
*
Pseudomonas fluorescens Pf-5 Site: position = -157 score = 5.48587 sequence = TGCAGTCATATTGACTGCG Site: position = -136 score = 4.86475 sequence = GGCGGTCTTTATGACTTCT Site: position = -111 score = 4.74232 sequence = TCTGGTCATAAAGACTCTT Gene: PFL_3310: hypothetical protein |
Gene: Pmen_3581: hypothetical protein |
Gene: PST_3122: hypothetical protein |
|
hypothetical protein |
| nnrS |
Gene: PA2662: NnrS protein involved in response to NO |
*
Pseudomonas entomophila L48 Site: position = -140 score = 5.1195 sequence = GGAAGTCAATATGACAACA Site: position = -115 score = 4.97335 sequence = CAAGGTCATTATGACAACA Gene: PSEEN3000: NnrS protein involved in response to NO |
*
Pseudomonas putida KT2440 Site: position = -140 score = 4.2274 sequence = GCCAGTCTGAATGACCGCA Gene: PP2840: NnrS protein involved in response to NO |
|
Gene: PFL_3309: NnrS protein involved in response to NO |
Gene: Pmen_3582: NnrS protein involved in response to NO |
Gene: PST_3544: NnrS protein involved in response to NO |
|
NnrS protein involved in response to NO |
| CRON 2. | |||||||||
| norR |
*
Pseudomonas aeruginosa PAO1 Site: position = -55 score = 4.988 sequence = ATAGGTCATAATGACTGCA Site: position = -10 score = 4.39231 sequence = AGAGGTCGAAATGACCACC Site: position = -30 score = 5.24862 sequence = CAGAGTCATTAGGACTGCA Gene: PA2665: anaerobic nitric oxide reductase transcription regulator, Fis family |
*
Pseudomonas entomophila L48 Site: position = -55 score = 4.45606 sequence = CGGTGTCATAAGGACACAC Site: position = -10 score = 5.24268 sequence = AGGAGTCCATATGACTGCA Site: position = -29 score = 4.16508 sequence = TATAGTCATTCCGACCAAC Gene: PSEEN0951: anaerobic nitric oxide reductase transcription regulator, Fis family |
*
Pseudomonas putida KT2440 Site: position = -29 score = 4.52831 sequence = TATAGTCATATCGACCCAT Site: position = -10 score = 5.30459 sequence = AGGAGTCCATATGACTACA Gene: PP0807: anaerobic nitric oxide reductase transcription regulator, Fis family |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -10 score = 5.86012 sequence = TGGAGTCATTATGACTGCA Site: position = -55 score = 4.89713 sequence = TATAGTCATAAAGACACTC Site: position = -29 score = 5.31487 sequence = TATAGTCATTAAGACACCA Gene: PFL_5041: anaerobic nitric oxide reductase transcription regulator, Fis family |
*
Pseudomonas mendocina ymp Site: position = -55 score = 4.86507 sequence = TGTTGTCTTAATGACTCGC Site: position = -29 score = 4.61013 sequence = GTGAGTCATAAAGACTTTG Site: position = -10 score = 4.89668 sequence = AGTAGTCGAAATGACCGCT Gene: Pmen_3579: anaerobic nitric oxide reductase transcription regulator, Fis family |
Gene: PST_3516: anaerobic nitric oxide reductase transcription regulator, Fis family |
*
Azotobacter vinelandii AvOP Site: position = -29 score = 4.99283 sequence = CGTTGTCAATAAGACTGCT Site: position = -54 score = 4.98232 sequence = TGCAGTCGTTTCGACTACG Site: position = -10 score = 4.27214 sequence = CGTTATCCGAATGACTACA Gene: Avin_51080: anaerobic nitric oxide reductase transcription regulator, Fis family |
anaerobic nitric oxide reductase transcription regulator, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |