Regulog NnrR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Denitrification
Effector:	Nitric oxide
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 14 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - NnrR
By TF family - CRP
By effector - Nitric oxide
By pathway - Denitrification

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1	10	4
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654	18	6
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM
Roseovarius sp. 217	12	4
Sulfitobacter sp. EE-36
Silicibacter TM1040
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
norC	* Rhodobacter sphaeroides 2.4.1 Site: position = -78 score = 4.32818 sequence = CGTTGCGATCCCGCAACT Gene: RSP_0324: Nitric-oxide reductase subunit C (EC 1.7.99.7)	Paracoccus denitrificans PD1222 Gene: Pden_2484: Nitric-oxide reductase subunit C (EC 1.7.99.7)	Jannaschia sp. CCS1	* Rhodobacterales bacterium HTCC2654 Site: position = -146 score = 4.31714 sequence = CTTTGCGTTTCCACAACA Gene: RB2654_12779: Nitric-oxide reductase subunit C (EC 1.7.99.7)	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -74 score = 4.58687 sequence = CATTGCGCTGCAACAAAC Gene: ROS217_10037: Nitric-oxide reductase subunit C (EC 1.7.99.7)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0217: Nitric-oxide reductase subunit C (EC 1.7.99.7)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitric-oxide reductase subunit C (EC 1.7.99.7)
norB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0323: Nitric-oxide reductase subunit B (EC 1.7.99.7)	Paracoccus denitrificans PD1222 Gene: Pden_2483: Nitric-oxide reductase subunit B (EC 1.7.99.7)	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12784: Nitric-oxide reductase subunit B (EC 1.7.99.7)	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10042: Nitric-oxide reductase subunit B (EC 1.7.99.7)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0216: Nitric-oxide reductase subunit B (EC 1.7.99.7)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitric-oxide reductase subunit B (EC 1.7.99.7)
norQ	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0322: Nitric oxide reductase activation protein NorQ	Paracoccus denitrificans PD1222 Gene: Pden_2482: Nitric oxide reductase activation protein NorQ	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12789: Nitric oxide reductase activation protein NorQ	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10047: Nitric oxide reductase activation protein NorQ	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0215: Nitric oxide reductase activation protein NorQ	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitric oxide reductase activation protein NorQ
norD	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0321: Nitric oxide reductase activation protein NorD	Paracoccus denitrificans PD1222 Gene: Pden_2481: Nitric oxide reductase activation protein NorD	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12794: Nitric oxide reductase activation protein NorD	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10052: Nitric oxide reductase activation protein NorD	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0214: Nitric oxide reductase activation protein NorD	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitric oxide reductase activation protein NorD
nnrT	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0320: hypothetical protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12799: hypothetical protein	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10057: hypothetical protein	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
nnrT1	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0319: NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10062: NnrU	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
nnrU	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0318: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Paracoccus denitrificans PD1222 Gene: Pden_2334: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12804: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_14306: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO1134: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444 Gene: HNE_1547: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)	Oceanicaulis alexandrii HTCC2633	NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
Pden_4223	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10067: hypothetical protein	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein

CRON 2.
nosR	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4220: Nitrous oxide reductase maturation protein NosR	Jannaschia sp. CCS1	* Rhodobacterales bacterium HTCC2654 Site: position = -73 score = 4.84895 sequence = GTTTGCGAAATCACAAAC Gene: RB2654_12849: Nitrous oxide reductase maturation protein NosR	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15196: Nitrous oxide reductase maturation protein NosR	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0049: Nitrous oxide reductase maturation protein NosR	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous oxide reductase maturation protein NosR
nosZ	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4219: Nitrous-oxide reductase (EC 1.7.99.6)	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12844: Nitrous-oxide reductase (EC 1.7.99.6)	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15191: Nitrous-oxide reductase (EC 1.7.99.6)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0050: Nitrous-oxide reductase (EC 1.7.99.6)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous-oxide reductase (EC 1.7.99.6)
nosD	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4218: Nitrous oxide reductase maturation protein NosD	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12839: Nitrous oxide reductase maturation protein NosD	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15186: Nitrous oxide reductase maturation protein NosD	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0051: Nitrous oxide reductase maturation protein NosD	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous oxide reductase maturation protein NosD
nosF	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4217: Nitrous oxide reductase maturation protein NosF (ATPase)	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12834: Nitrous oxide reductase maturation protein NosF (ATPase)	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15181: Nitrous oxide reductase maturation protein NosF (ATPase)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0052: Nitrous oxide reductase maturation protein NosF (ATPase)	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous oxide reductase maturation protein NosF (ATPase)
nosY	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4216: Nitrous oxide reductase maturation transmembrane protein NosY	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12829: Nitrous oxide reductase maturation transmembrane protein NosY	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15176: Nitrous oxide reductase maturation transmembrane protein NosY	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0053: Nitrous oxide reductase maturation transmembrane protein NosY	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous oxide reductase maturation transmembrane protein NosY
nosL	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4215: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12824: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15171: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0054: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
nosX	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_4214: Nitrous oxide reductase maturation periplasmic protein NosX	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12819: Nitrous oxide reductase maturation periplasmic protein NosX	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_15166: Nitrous oxide reductase maturation periplasmic protein NosX	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrous oxide reductase maturation periplasmic protein NosX

CRON 3.
nnrR	* Rhodobacter sphaeroides 2.4.1 Site: position = -32 score = 4.62004 sequence = CATTGTGCTGCCGCAAAT Gene: RSP_0327: Nitric oxide responding transcriptional regulator NnrR, Crp family	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	* Rhodobacterales bacterium HTCC2654 Site: position = -31 score = 4.02173 sequence = CATTGCACTTCGACAAAC Gene: RB2654_12769: Nitric oxide responding transcriptional regulator NnrR, Crp family	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -46 score = 4.87794 sequence = TTTTGCTCTGGCGCAAAC Gene: ROS217_10027: Nitric oxide responding transcriptional regulator NnrR, Crp family	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitric oxide responding transcriptional regulator NnrR, Crp family

CRON 4.
DUF1858	* Rhodobacter sphaeroides 2.4.1 Site: position = -89 score = 4.32818 sequence = AGTTGCGGGATCGCAACG Gene: RSP_0325: hypothetical protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	* Rhodobacterales bacterium HTCC2654 Site: position = -63 score = 4.31714 sequence = TGTTGTGGAAACGCAAAG Gene: RB2654_12774: hypothetical protein	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -64 score = 4.58687 sequence = GTTTGTTGCAGCGCAATG Gene: ROS217_10032: hypothetical protein	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein

CRON 5.
COG3794	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	* Rhodobacterales bacterium HTCC2654 Site: position = -84 score = 4.02173 sequence = GTTTGTCGAAGTGCAATG Gene: RB2654_12764: Pseudoazurin precursor	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -81 score = 4.87794 sequence = GTTTGCGCCAGAGCAAAA Gene: ROS217_10022: Pseudoazurin precursor	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Pseudoazurin precursor
nirK	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	* Rhodobacterales bacterium HTCC2654 Site: position = -168 score = 4.25858 sequence = CTTTGCGCTTGATCAATA Gene: RB2654_12814: Copper-containing nitrite reductase (EC 1.7.2.1)	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM Gene: ISM_17635: Copper-containing nitrite reductase (EC 1.7.2.1)	Roseovarius sp. 217 Gene: ROS217_10017: Copper-containing nitrite reductase (EC 1.7.2.1)	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Copper-containing nitrite reductase (EC 1.7.2.1)
nirV	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12809: Nitrite reductase accessory protein NirV	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_10012: Nitrite reductase accessory protein NirV	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Nitrite reductase accessory protein NirV
nnrS	* Rhodobacter sphaeroides 2.4.1 Site: position = -197 score = 4.62004 sequence = ATTTGCGGCAGCACAATG Gene: RSP_0328: NnrS protein involved in response to NO	Paracoccus denitrificans PD1222 Gene: Pden_4230: NnrS protein involved in response to NO	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_12759: NnrS protein involved in response to NO	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_14301: NnrS protein involved in response to NO	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444 Gene: HNE_1556: NnrS protein involved in response to NO	Oceanicaulis alexandrii HTCC2633	NnrS protein involved in response to NO

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NnrR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --