Regulog NnrR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Denitrification |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - NnrR
- By TF family - CRP
- By effector - Nitric oxide
- By pathway - Denitrification
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 10 | 4 |
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | 18 | 6 |
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | 12 | 4 |
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| norC |
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Rhodobacter sphaeroides 2.4.1 Site: position = -78 score = 4.32818 sequence = CGTTGCGATCCCGCAACT Gene: RSP_0324: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
Gene: Pden_2484: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Rhodobacterales bacterium HTCC2654 Site: position = -146 score = 4.31714 sequence = CTTTGCGTTTCCACAACA Gene: RB2654_12779: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Roseovarius sp. 217 Site: position = -74 score = 4.58687 sequence = CATTGCGCTGCAACAAAC Gene: ROS217_10037: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Gene: SPOA0217: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Nitric-oxide reductase subunit C (EC 1.7.99.7) |
| norB |
Gene: RSP_0323: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
Gene: Pden_2483: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Gene: RB2654_12784: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Gene: ROS217_10042: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Gene: SPOA0216: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Nitric-oxide reductase subunit B (EC 1.7.99.7) |
| norQ |
Gene: RSP_0322: Nitric oxide reductase activation protein NorQ |
Gene: Pden_2482: Nitric oxide reductase activation protein NorQ |
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Gene: RB2654_12789: Nitric oxide reductase activation protein NorQ |
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Gene: ROS217_10047: Nitric oxide reductase activation protein NorQ |
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Gene: SPOA0215: Nitric oxide reductase activation protein NorQ |
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Nitric oxide reductase activation protein NorQ |
| norD |
Gene: RSP_0321: Nitric oxide reductase activation protein NorD |
Gene: Pden_2481: Nitric oxide reductase activation protein NorD |
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Gene: RB2654_12794: Nitric oxide reductase activation protein NorD |
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Gene: ROS217_10052: Nitric oxide reductase activation protein NorD |
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Gene: SPOA0214: Nitric oxide reductase activation protein NorD |
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Nitric oxide reductase activation protein NorD |
| nnrT |
Gene: RSP_0320: hypothetical protein |
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Gene: RB2654_12799: hypothetical protein |
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Gene: ROS217_10057: hypothetical protein |
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hypothetical protein |
| nnrT1 |
Gene: RSP_0319: NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: ROS217_10062: NnrU |
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NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
| nnrU |
Gene: RSP_0318: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
Gene: Pden_2334: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: RB2654_12804: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: ROS217_14306: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: SPO1134: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: HNE_1547: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
| Pden_4223 |
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Gene: ROS217_10067: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||||||
| nosR |
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Gene: Pden_4220: Nitrous oxide reductase maturation protein NosR |
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Rhodobacterales bacterium HTCC2654 Site: position = -73 score = 4.84895 sequence = GTTTGCGAAATCACAAAC Gene: RB2654_12849: Nitrous oxide reductase maturation protein NosR |
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Gene: ROS217_15196: Nitrous oxide reductase maturation protein NosR |
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Gene: SPOA0049: Nitrous oxide reductase maturation protein NosR |
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Nitrous oxide reductase maturation protein NosR |
| nosZ |
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Gene: Pden_4219: Nitrous-oxide reductase (EC 1.7.99.6) |
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Gene: RB2654_12844: Nitrous-oxide reductase (EC 1.7.99.6) |
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Gene: ROS217_15191: Nitrous-oxide reductase (EC 1.7.99.6) |
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Gene: SPOA0050: Nitrous-oxide reductase (EC 1.7.99.6) |
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Nitrous-oxide reductase (EC 1.7.99.6) |
| nosD |
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Gene: Pden_4218: Nitrous oxide reductase maturation protein NosD |
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Gene: RB2654_12839: Nitrous oxide reductase maturation protein NosD |
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Gene: ROS217_15186: Nitrous oxide reductase maturation protein NosD |
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Gene: SPOA0051: Nitrous oxide reductase maturation protein NosD |
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Nitrous oxide reductase maturation protein NosD |
| nosF |
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Gene: Pden_4217: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Gene: RB2654_12834: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Gene: ROS217_15181: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Gene: SPOA0052: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Nitrous oxide reductase maturation protein NosF (ATPase) |
| nosY |
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Gene: Pden_4216: Nitrous oxide reductase maturation transmembrane protein NosY |
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Gene: RB2654_12829: Nitrous oxide reductase maturation transmembrane protein NosY |
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Gene: ROS217_15176: Nitrous oxide reductase maturation transmembrane protein NosY |
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Gene: SPOA0053: Nitrous oxide reductase maturation transmembrane protein NosY |
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Nitrous oxide reductase maturation transmembrane protein NosY |
| nosL |
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Gene: Pden_4215: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Gene: RB2654_12824: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Gene: ROS217_15171: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Gene: SPOA0054: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
| nosX |
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Gene: Pden_4214: Nitrous oxide reductase maturation periplasmic protein NosX |
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Gene: RB2654_12819: Nitrous oxide reductase maturation periplasmic protein NosX |
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Gene: ROS217_15166: Nitrous oxide reductase maturation periplasmic protein NosX |
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Nitrous oxide reductase maturation periplasmic protein NosX |
| CRON 3. | ||||||||||||||||
| nnrR |
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Rhodobacter sphaeroides 2.4.1 Site: position = -32 score = 4.62004 sequence = CATTGTGCTGCCGCAAAT Gene: RSP_0327: Nitric oxide responding transcriptional regulator NnrR, Crp family |
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Rhodobacterales bacterium HTCC2654 Site: position = -31 score = 4.02173 sequence = CATTGCACTTCGACAAAC Gene: RB2654_12769: Nitric oxide responding transcriptional regulator NnrR, Crp family |
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Roseovarius sp. 217 Site: position = -46 score = 4.87794 sequence = TTTTGCTCTGGCGCAAAC Gene: ROS217_10027: Nitric oxide responding transcriptional regulator NnrR, Crp family |
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Nitric oxide responding transcriptional regulator NnrR, Crp family |
| CRON 4. | ||||||||||||||||
| DUF1858 |
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Rhodobacter sphaeroides 2.4.1 Site: position = -89 score = 4.32818 sequence = AGTTGCGGGATCGCAACG Gene: RSP_0325: hypothetical protein |
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Rhodobacterales bacterium HTCC2654 Site: position = -63 score = 4.31714 sequence = TGTTGTGGAAACGCAAAG Gene: RB2654_12774: hypothetical protein |
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Roseovarius sp. 217 Site: position = -64 score = 4.58687 sequence = GTTTGTTGCAGCGCAATG Gene: ROS217_10032: hypothetical protein |
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hypothetical protein |
| CRON 5. | ||||||||||||||||
| COG3794 |
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Rhodobacterales bacterium HTCC2654 Site: position = -84 score = 4.02173 sequence = GTTTGTCGAAGTGCAATG Gene: RB2654_12764: Pseudoazurin precursor |
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Roseovarius sp. 217 Site: position = -81 score = 4.87794 sequence = GTTTGCGCCAGAGCAAAA Gene: ROS217_10022: Pseudoazurin precursor |
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Pseudoazurin precursor |
| nirK |
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Rhodobacterales bacterium HTCC2654 Site: position = -168 score = 4.25858 sequence = CTTTGCGCTTGATCAATA Gene: RB2654_12814: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Gene: ISM_17635: Copper-containing nitrite reductase (EC 1.7.2.1) |
Gene: ROS217_10017: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Copper-containing nitrite reductase (EC 1.7.2.1) |
| nirV |
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Gene: RB2654_12809: Nitrite reductase accessory protein NirV |
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Gene: ROS217_10012: Nitrite reductase accessory protein NirV |
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Nitrite reductase accessory protein NirV |
| nnrS |
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Rhodobacter sphaeroides 2.4.1 Site: position = -197 score = 4.62004 sequence = ATTTGCGGCAGCACAATG Gene: RSP_0328: NnrS protein involved in response to NO |
Gene: Pden_4230: NnrS protein involved in response to NO |
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Gene: RB2654_12759: NnrS protein involved in response to NO |
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Gene: ROS217_14301: NnrS protein involved in response to NO |
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Gene: HNE_1556: NnrS protein involved in response to NO |
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NnrS protein involved in response to NO |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |