Regulog NikR - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - NikR
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | ||
| Magnetospirillum magnetotacticum MS-1 | ||
| Magnetospirillum magneticum AMB-1 | ||
| Azospirillum sp. B510 | 6 | 2 |
| Rhodospirillum centenum SW | ||
| Gluconacetobacter diazotrophicus PAl 5 | ||
| Acetobacter pasteurianus IFO 3283-01 | ||
| Gluconobacter oxydans 621H | ||
| Granulibacter bethesdensis CGDNIH1 |
| Genes | Function | |||||||||
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| CRON 1. | ||||||||||
| nikR |
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Azospirillum sp. B510 Site: position = -73 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: AZL_008760: Nickel-responsive repressor NikR, CopG family |
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Nickel-responsive repressor NikR, CopG family |
| CRON 2. | ||||||||||
| nikA |
Gene: Rru_A2277: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
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Azospirillum sp. B510 Site: position = -126 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: AZL_008770: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
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Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
| nikB |
Gene: Rru_A2276: Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
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Gene: AZL_008780: Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
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Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
| nikC |
Gene: Rru_A2275: Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
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Gene: AZL_008790: Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
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Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
| nikD |
Gene: Rru_A2274: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
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Gene: AZL_008800: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
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Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
| nikE |
Gene: Rru_A2273: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
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Gene: AZL_008810: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
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Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |