Regulog NikR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NikR
- By taxonomy - Rhodobacterales
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 5 | 1 |
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | 5 | 1 |
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| SKA53_15386 |
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Loktanella vestfoldensis SKA53 Site: position = -42 score = 7.40822 sequence = GTATGAA-(14)-TTCATAC Gene: SKA53_15386: Sll0381 protein |
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Sll0381 protein |
| nikL |
Gene: RSP_3208: Additional component NikL of nickel ECF transporter |
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Gene: SKA53_15381: Additional component NikL of nickel ECF transporter |
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Additional component NikL of nickel ECF transporter |
| nikM |
Gene: RSP_3207: Substrate-specific component NikM of nickel ECF transporter |
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Gene: SKA53_15376: Substrate-specific component NikM of nickel ECF transporter |
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Substrate-specific component NikM of nickel ECF transporter |
| nikQ |
Gene: RSP_3209: Transmembrane component NikQ of energizing module of nickel ECF transporter |
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Gene: SKA53_15371: Transmembrane component NikQ of energizing module of nickel ECF transporter |
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Transmembrane component NikQ of energizing module of nickel ECF transporter |
| nikO |
Gene: RSP_3211: ATPase component NikO of energizing module of nickel ECF transporter |
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Gene: SKA53_15366: ATPase component NikO of energizing module of nickel ECF transporter |
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ATPase component NikO of energizing module of nickel ECF transporter |
| nikK |
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Rhodobacter sphaeroides 2.4.1 Site: position = -40 score = 7.579 sequence = GTATGAT-(14)-TTCATAC Gene: RSP_6168: Additional periplasmic component NikK of nickel ECF transporter |
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Additional periplasmic component NikK of nickel ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |