Regulog NikR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NikR
- By taxonomy - Pseudomonadaceae
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | ||
| Pseudomonas putida KT2440 | 6 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | ||
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | ||
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
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| CRON 1. | |||||||||
| nikA |
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Pseudomonas putida KT2440 Site: position = -74 score = 7.3804 sequence = GTAAGAT-(14)-ATCATAC Gene: PP3342: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
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Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
| nikB |
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Gene: PP3343: Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
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Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
| nikC |
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Gene: PP3344: Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
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Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
| nikD |
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Gene: PP3345: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
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Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
| nikE |
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Gene: PP3346: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
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Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
| CRON 2. | |||||||||
| NikR |
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Pseudomonas putida KT2440 Site: position = -41 score = 7.3804 sequence = GTATGAT-(14)-ATCTTAC Gene: PP3341: Nickel responsive regulator NikR, CopG family |
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Nickel responsive regulator NikR, CopG family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |