Regulog NikR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By trascription factor - NikR
By taxonomy - Pseudomonadaceae
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas putida KT2440	6	2
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
nikA	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas putida KT2440 Site: position = -74 score = 7.3804 sequence = GTAAGAT-(14)-ATCATAC Gene: PP3342: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
nikB	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP3343: Nickel transport system permease protein NikB (TC 3.A.1.5.3)	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nickel transport system permease protein NikB (TC 3.A.1.5.3)
nikC	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP3344: Nickel transport system permease protein NikC (TC 3.A.1.5.3)	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nickel transport system permease protein NikC (TC 3.A.1.5.3)
nikD	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP3345: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
nikE	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440 Gene: PP3346: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)

CRON 2.
NikR	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas putida KT2440 Site: position = -41 score = 7.3804 sequence = GTATGAT-(14)-ATCTTAC Gene: PP3341: Nickel responsive regulator NikR, CopG family	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Nickel responsive regulator NikR, CopG family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NikR - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --