Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15 1 1
Geobacter sulfurreducens PCA 1 1
Geobacter uraniumreducens Rf4 1 1
Geobacter sp. FRC-32 1 1
Geobacter sp. M21 1 1
Geobacter lovleyi SZ 4 2
Pelobacter propionicus DSM 2379 1 1
Pelobacter carbinolicus str. DSM 2380 1 1
Desulfuromonas acetoxidans DSM 684 7 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdJ
*2
Geobacter metallireducens GS-15

Gene: Gmet_1911: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)

Site:
position = -101
score = 5.03299
sequence = GCCATACATATTGTGG

Gene: Gmet_1297: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Geobacter sulfurreducens PCA

Site:
position = -93
score = 4.1703
sequence = ACACCATATATATTGT

Site:
position = -91
score = 5.15265
sequence = ACCATATATATTGTGG

Gene: GSU1871: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*2
Geobacter uraniumreducens Rf4

Site:
position = -100
score = 5.10699
sequence = GCCATACATGTTGTGG

Site:
position = -68
score = 4.26977
sequence = CCACAAAATGTGGTAT

Gene: Gura_2259: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)

Gene: Gura_0185: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Geobacter sp. FRC-32

Site:
position = -89
score = 5.15893
sequence = GCCATATATGTTGTGG

Site:
position = -57
score = 4.3375
sequence = CCACTAAATATAGTAT

Gene: Geob_3024: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Geobacter sp. M21

Site:
position = -98
score = 4.36595
sequence = GTCATACATCTTGTGG

Site:
position = -67
score = 4.76379
sequence = CCACTAAATGTGGTGT

Gene: GM21_3073: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Geobacter lovleyi SZ

Site:
position = -108
score = 4.79099
sequence = GCACAAAATGTTGTGA

Site:
position = -140
score = 4.92397
sequence = CACATATATGTTGTGG

Gene: Glov_2318: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Pelobacter propionicus DSM 2379

Site:
position = -128
score = 4.88757
sequence = GACATATATGTTGTGG

Site:
position = -150
score = 4.33711
sequence = ACCCAATCTATTCTGT

Gene: Ppro_2498: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -95
score = 4.77817
sequence = ACCCAAGATATTGTGG

Gene: Pcar_1852: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -47
score = 4.0922
sequence = ACACTCCATGTGGTAC

Site:
position = -78
score = 5.03828
sequence = ACACGATATATTGTGT

Gene: Dace_1005: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
CRON 2.
nrdD
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
*
Geobacter lovleyi SZ

Site:
position = -355
score = 4.62033
sequence = CCACAACATATTCTGC

Site:
position = -387
score = 4.74782
sequence = ACTCTATATCTTGTGT

Gene: Glov_1779: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
*3
Desulfuromonas acetoxidans DSM 684

Site:
position = -122
score = 4.59654
sequence = GAACAACATGTTGTAG

Site:
position = -90
score = 4.04884
sequence = TCTCTACATCTAGTGT

Gene: Dace_0338: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)

Gene: Dace_0337: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)

Site:
position = -422
score = 5.04456
sequence = CCACAATATGTTGTGA

Gene: Dace_0674: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ

Gene: Glov_1781: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_2732: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 2
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0336: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Gene: Dace_0676: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Glov_1780
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter lovleyi SZ

Gene: Glov_1780: hypothetical protein
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_0675: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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