Regulog NrdR - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 2 | 2 |
| Erythrobacter sp. NAP1 | 2 | 2 |
| Novosphingobium aromaticivorans DSM 12444 | 1 | 1 |
| Sphingopyxis alaskensis RB2256 | 3 | 1 |
| Sphingobium japonicum UT26S | 3 | 1 |
| Sphingomonas wittichii RW1 | 3 | 2 |
| Zymomonas mobilis subsp. mobilis ZM4 | 2 | 2 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| nrdA |
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Erythrobacter litoralis HTCC2594 Site: position = -294 score = 4.15015 sequence = ATTCAGTATCTAGTGG Site: position = -261 score = 4.09705 sequence = CCCCAAAACCTAGTTG Gene: ELI_11635: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Erythrobacter sp. NAP1 Site: position = -306 score = 4.15015 sequence = ATTCAGTATCTAGTGG Gene: NAP1_14488: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -263 score = 4.8112 sequence = GCACTATGGGTTGTGG Site: position = -231 score = 3.72829 sequence = CCTCTAAACCTAGTTT Gene: Saro_0274: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Sphingopyxis alaskensis RB2256 Site: position = -111 score = 4.39251 sequence = CCCCAATAAATAGTGT Site: position = -143 score = 4.59858 sequence = GCACTATGGGTGGTGG Gene: Sala_1773: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Sphingobium japonicum UT26S Site: position = 11 score = 4.04398 sequence = GCACTATCCCTTGTAT Site: position = 43 score = 4.23934 sequence = ACCCAACAGATTGTGA Gene: SJA_C1-32220: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Sphingomonas wittichii RW1 Site: position = -234 score = 5.02945 sequence = GCACTATAGGTTGTGT Site: position = -203 score = 4.28289 sequence = GCGCTAGAGATGGTGG Gene: Swit_1504: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -204 score = 4.52171 sequence = ATACTGTATCTAGTGG Gene: ZMO1039: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| Sala_1774 |
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Gene: Sala_1774: protein of unknown function DUF559 |
Gene: SJA_C1-32230: protein of unknown function DUF559 |
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protein of unknown function DUF559 |
| nrdB |
*
Erythrobacter litoralis HTCC2594 Site: position = -87 score = 4.69185 sequence = CCACAAGATGTCGTTG Site: position = -43 score = 3.80765 sequence = CCACCACATATTGATT Gene: ELI_11600: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Erythrobacter sp. NAP1 Site: position = -7 score = 4.77414 sequence = ACACAAGATGTCGTTG Gene: NAP1_14518: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Saro_0271: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Sala_1775: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: SJA_C1-32240: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Swit_1506: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -97 score = 4.49667 sequence = ATACAATATGTAGAGT Gene: ZMO0443: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| Swit_1505 |
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*
Sphingomonas wittichii RW1 Site: position = -191 score = 4.79848 sequence = ACACAAGCTCTTGTGG Gene: Swit_1505: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |