Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594 2 2
Erythrobacter sp. NAP1 2 2
Novosphingobium aromaticivorans DSM 12444 1 1
Sphingopyxis alaskensis RB2256 3 1
Sphingobium japonicum UT26S 3 1
Sphingomonas wittichii RW1 3 2
Zymomonas mobilis subsp. mobilis ZM4 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Erythrobacter litoralis HTCC2594

Site:
position = -294
score = 4.15015
sequence = ATTCAGTATCTAGTGG

Site:
position = -261
score = 4.09705
sequence = CCCCAAAACCTAGTTG

Gene: ELI_11635: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Erythrobacter sp. NAP1

Site:
position = -306
score = 4.15015
sequence = ATTCAGTATCTAGTGG

Gene: NAP1_14488: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -263
score = 4.8112
sequence = GCACTATGGGTTGTGG

Site:
position = -231
score = 3.72829
sequence = CCTCTAAACCTAGTTT

Gene: Saro_0274: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Sphingopyxis alaskensis RB2256

Site:
position = -111
score = 4.39251
sequence = CCCCAATAAATAGTGT

Site:
position = -143
score = 4.59858
sequence = GCACTATGGGTGGTGG

Gene: Sala_1773: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Sphingobium japonicum UT26S

Site:
position = 11
score = 4.04398
sequence = GCACTATCCCTTGTAT

Site:
position = 43
score = 4.23934
sequence = ACCCAACAGATTGTGA

Gene: SJA_C1-32220: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Sphingomonas wittichii RW1

Site:
position = -234
score = 5.02945
sequence = GCACTATAGGTTGTGT

Site:
position = -203
score = 4.28289
sequence = GCGCTAGAGATGGTGG

Gene: Swit_1504: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -204
score = 4.52171
sequence = ATACTGTATCTAGTGG

Gene: ZMO1039: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Sala_1774
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1774: protein of unknown function DUF559
 
Sphingobium japonicum UT26S

Gene: SJA_C1-32230: protein of unknown function DUF559
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
protein of unknown function DUF559
nrdB
*
Erythrobacter litoralis HTCC2594

Site:
position = -87
score = 4.69185
sequence = CCACAAGATGTCGTTG

Site:
position = -43
score = 3.80765
sequence = CCACCACATATTGATT

Gene: ELI_11600: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Erythrobacter sp. NAP1

Site:
position = -7
score = 4.77414
sequence = ACACAAGATGTCGTTG

Gene: NAP1_14518: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_0271: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Sphingopyxis alaskensis RB2256

Gene: Sala_1775: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Sphingobium japonicum UT26S

Gene: SJA_C1-32240: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Sphingomonas wittichii RW1

Gene: Swit_1506: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -97
score = 4.49667
sequence = ATACAATATGTAGAGT

Gene: ZMO0443: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Swit_1505
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
 
Sphingobium japonicum UT26S
*
Sphingomonas wittichii RW1

Site:
position = -191
score = 4.79848
sequence = ACACAAGCTCTTGTGG

Gene: Swit_1505: hypothetical protein
 
Zymomonas mobilis subsp. mobilis ZM4
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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