Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 1 1
Paracoccus denitrificans PD1222 1 1
Jannaschia sp. CCS1 1 1
Rhodobacterales bacterium HTCC2654 1 1
Oceanicola granulosus HTCC2516 1 1
Loktanella vestfoldensis SKA53 1 1
Oceanicola batsensis HTCC2597 1 1
Roseovarius nubinhibens ISM 1 1
Roseovarius sp. 217 1 1
Sulfitobacter sp. EE-36 1 1
Silicibacter TM1040 1 1
Silicibacter pomeroyi DSS-3 1 1
Roseobacter sp. MED193 1 1
Hyphomonas neptunium ATCC 15444 2 2
Oceanicaulis alexandrii HTCC2633 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdB
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -80
score = 5.35414
sequence = GCACTATATGTGGTGT

Gene: HNE_0373: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -102
score = 5.36097
sequence = GCACAATATCTTGTGT

Gene: OA2633_06714: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
nrdA
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
*
Hyphomonas neptunium ATCC 15444

Site:
position = -182
score = 5.42435
sequence = ACACTATATCTTGTGT

Gene: HNE_0869: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -121
score = 5.09321
sequence = GCACTATATGTTGCGG

Gene: OA2633_06729: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
CRON 3.
nrdJ
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -237
score = 4.18793
sequence = GCACATTATCTTGGGG

Gene: RSP_2495: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Paracoccus denitrificans PD1222

Site:
position = -168
score = 5.0094
sequence = CCACCAGATCTTGTGT

Gene: Pden_1384: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Jannaschia sp. CCS1

Site:
position = -231
score = 4.5987
sequence = CTACCACATATAGGGT

Gene: Jann_2472: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -209
score = 5.39802
sequence = CCACAACATATAGTGG

Gene: RB2654_04361: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Oceanicola granulosus HTCC2516

Site:
position = -211
score = 4.62432
sequence = CCACTAGATGTGGTAG

Gene: OG2516_03765: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Loktanella vestfoldensis SKA53

Site:
position = -191
score = 4.73405
sequence = CCACCATATGTCGCGT

Gene: SKA53_03076: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Oceanicola batsensis HTCC2597

Site:
position = -179
score = 4.75868
sequence = CCACCACATATTGAGG

Gene: OB2597_03639: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Roseovarius nubinhibens ISM

Site:
position = -249
score = 5.28728
sequence = CTACAATATATAGTGT

Gene: ISM_14850: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Roseovarius sp. 217

Site:
position = -185
score = 5.39802
sequence = CCACAACATATAGTGG

Gene: ROS217_22582: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Sulfitobacter sp. EE-36

Site:
position = -190
score = 5.00528
sequence = CCACTACATCTGGTGA

Gene: EE36_16117: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Silicibacter TM1040

Site:
position = -204
score = 4.4888
sequence = CCACAAGATCTAGTTG

Gene: TM1040_1151: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Silicibacter pomeroyi DSS-3

Site:
position = -209
score = 4.58969
sequence = CCACAAAATCTGGTAG

Gene: SPO2136: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Roseobacter sp. MED193

Site:
position = -204
score = 4.86642
sequence = CCACAATATCTAGTTG

Gene: MED193_03787: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2255: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_03371: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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