Regulog NrdR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Rhodobacterales
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 1 | 1 |
| Paracoccus denitrificans PD1222 | 1 | 1 |
| Jannaschia sp. CCS1 | 1 | 1 |
| Rhodobacterales bacterium HTCC2654 | 1 | 1 |
| Oceanicola granulosus HTCC2516 | 1 | 1 |
| Loktanella vestfoldensis SKA53 | 1 | 1 |
| Oceanicola batsensis HTCC2597 | 1 | 1 |
| Roseovarius nubinhibens ISM | 1 | 1 |
| Roseovarius sp. 217 | 1 | 1 |
| Sulfitobacter sp. EE-36 | 1 | 1 |
| Silicibacter TM1040 | 1 | 1 |
| Silicibacter pomeroyi DSS-3 | 1 | 1 |
| Roseobacter sp. MED193 | 1 | 1 |
| Hyphomonas neptunium ATCC 15444 | 2 | 2 |
| Oceanicaulis alexandrii HTCC2633 | 2 | 2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| nrdB |
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Hyphomonas neptunium ATCC 15444 Site: position = -80 score = 5.35414 sequence = GCACTATATGTGGTGT Gene: HNE_0373: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Oceanicaulis alexandrii HTCC2633 Site: position = -102 score = 5.36097 sequence = GCACAATATCTTGTGT Gene: OA2633_06714: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | ||||||||||||||||
| nrdA |
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Hyphomonas neptunium ATCC 15444 Site: position = -182 score = 5.42435 sequence = ACACTATATCTTGTGT Gene: HNE_0869: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Oceanicaulis alexandrii HTCC2633 Site: position = -121 score = 5.09321 sequence = GCACTATATGTTGCGG Gene: OA2633_06729: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| CRON 3. | ||||||||||||||||
| nrdJ |
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Rhodobacter sphaeroides 2.4.1 Site: position = -237 score = 4.18793 sequence = GCACATTATCTTGGGG Gene: RSP_2495: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Paracoccus denitrificans PD1222 Site: position = -168 score = 5.0094 sequence = CCACCAGATCTTGTGT Gene: Pden_1384: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Jannaschia sp. CCS1 Site: position = -231 score = 4.5987 sequence = CTACCACATATAGGGT Gene: Jann_2472: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Rhodobacterales bacterium HTCC2654 Site: position = -209 score = 5.39802 sequence = CCACAACATATAGTGG Gene: RB2654_04361: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Oceanicola granulosus HTCC2516 Site: position = -211 score = 4.62432 sequence = CCACTAGATGTGGTAG Gene: OG2516_03765: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Loktanella vestfoldensis SKA53 Site: position = -191 score = 4.73405 sequence = CCACCATATGTCGCGT Gene: SKA53_03076: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Oceanicola batsensis HTCC2597 Site: position = -179 score = 4.75868 sequence = CCACCACATATTGAGG Gene: OB2597_03639: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Roseovarius nubinhibens ISM Site: position = -249 score = 5.28728 sequence = CTACAATATATAGTGT Gene: ISM_14850: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Roseovarius sp. 217 Site: position = -185 score = 5.39802 sequence = CCACAACATATAGTGG Gene: ROS217_22582: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Sulfitobacter sp. EE-36 Site: position = -190 score = 5.00528 sequence = CCACTACATCTGGTGA Gene: EE36_16117: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Silicibacter TM1040 Site: position = -204 score = 4.4888 sequence = CCACAAGATCTAGTTG Gene: TM1040_1151: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Silicibacter pomeroyi DSS-3 Site: position = -209 score = 4.58969 sequence = CCACAAAATCTGGTAG Gene: SPO2136: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Roseobacter sp. MED193 Site: position = -204 score = 4.86642 sequence = CCACAATATCTAGTTG Gene: MED193_03787: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Gene: HNE_2255: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Gene: OA2633_03371: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |