Regulog NrdR - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | 1 | 1 |
| Thauera sp. MZ1T | 1 | 1 |
| Dechloromonas aromatica RCB | 1 | 1 |
| Nitrosomonas europaea ATCC 19718 | 2 | 1 |
| Nitrosospira multiformis ATCC 25196 | 2 | 1 |
| Thiobacillus denitrificans | 2 | 1 |
| Chromobacterium violaceum ATCC 12472 | 7 | 3 |
| Neisseria meningitidis MC58 | 5 | 1 |
| Laribacter hongkongensis HLHK9 | 6 | 3 |
| Methylobacillus flagellatus KT | 5 | 2 |
| Methylotenera mobilis JLW8 | 4 | 2 |
| Methylophilales bacterium HTCC2181 | 1 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| nrdA |
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Neisseria meningitidis MC58 Site: position = -72 score = 4.10309 sequence = ATCCACTATATTGTCT Gene: NMB1291: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Methylobacillus flagellatus KT Site: position = -376 score = 5.29873 sequence = GAACAATATATAGTGT Gene: Mfla_1223: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| NMB1290 |
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Gene: NMB1290: C-5 cytosine-specific DNA-methylase |
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C-5 cytosine-specific DNA-methylase |
| NMB1289 |
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Gene: NMB1289: type II restriction enzyme, putative |
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type II restriction enzyme, putative |
| nrdB |
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Gene: NMB1288: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Mfla_1224: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| yfaE |
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Gene: NMB1287: Ferredoxin |
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Gene: Mfla_1225: Ferredoxin |
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Ferredoxin |
| CRON 2. | |||||||||||||
| nrdD |
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Chromobacterium violaceum ATCC 12472 Site: position = -162 score = 4.4603 sequence = GCACAATATATTGATC Gene: CV2412: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Laribacter hongkongensis HLHK9 Site: position = -80 score = 5.56687 sequence = ACACAACATCTTGTGT Gene: LHK_02258: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
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Gene: CV2413: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: LHK_02259: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 3. | |||||||||||||
| nrdJa |
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Azoarcus sp. EbN1 Site: position = -140 score = 4.83809 sequence = CTACTACATATAGTAC Gene: ebA4850: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Thauera sp. MZ1T Site: position = -149 score = 4.89862 sequence = CTACTACATGTAGTGC Gene: Tmz1t_1360: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Dechloromonas aromatica RCB Site: position = -75 score = 4.80233 sequence = GCACTATATCTAGTAG Gene: Daro_0964: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Gene: Tbd_0058: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Chromobacterium violaceum ATCC 12472 Site: position = -121 score = 4.56469 sequence = ACACAACAACTTGCGT Site: position = -88 score = 5.328 sequence = TAACAACATATAGTGT Gene: CV1446: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Laribacter hongkongensis HLHK9 Site: position = -158 score = 5.34018 sequence = AAACAACATCTAGTGT Gene: LHK_01596: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Methylobacillus flagellatus KT Site: position = -95 score = 5.06584 sequence = TCACTATATGTTGTGG Gene: Mfla_2541: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Methylotenera mobilis JLW8 Site: position = -148 score = 5.55372 sequence = ACACAATATATAGTGG Gene: Mmol_0049: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Methylophilales bacterium HTCC2181 Site: position = -82 score = 5.44506 sequence = TCACAACATATTGTGG Gene: MB2181_01310: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| nrdJb |
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Gene: Mfla_2542: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
Gene: Mmol_0050: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
| CRON 4. | |||||||||||||
| nrdA |
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Nitrosomonas europaea ATCC 19718 Site: position = -116 score = 5.70196 sequence = ACACAATATATTGTGT Gene: NE2423: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Nitrosospira multiformis ATCC 25196 Site: position = -112 score = 4.8583 sequence = CTACTATATATAGTAG Gene: Nmul_A2468: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Thiobacillus denitrificans Site: position = -88 score = 4.63574 sequence = CCACAAGATGTTGTGA Gene: Tbd_1976: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Chromobacterium violaceum ATCC 12472 Site: position = -283 score = 5.18318 sequence = CTACAACATCTAGTGC Site: position = -50 score = 4.54922 sequence = ACGGTATATATTGTGT Gene: CV2287: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Laribacter hongkongensis HLHK9 Site: position = -69 score = 5.45724 sequence = ACACAACATCTTGTGC Gene: LHK_01803: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Methylotenera mobilis JLW8 Site: position = -442 score = 4.90239 sequence = TATCAATATATTGTGT Gene: Mmol_1920: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| CV2286 |
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Gene: CV2286: hypothetical protein |
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hypothetical protein |
| CV2285 |
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Gene: CV2285: hypothetical protein |
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hypothetical protein |
| nrdB |
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Gene: NE2422: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Nmul_A2469: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Tbd_1975: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CV2284: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: LHK_01801: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Mmol_1921: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CV3202 |
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Gene: LHK_01802: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |