Regulog NrdR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Burkholderia
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 5 | 2 |
| Burkholderia mallei ATCC 23344 | 5 | 2 |
| Burkholderia sp. 383 | 2 | 1 |
| Burkholderia cepacia AMMD | 2 | 1 |
| Burkholderia vietnamiensis G4 | 2 | 1 |
| Burkholderia glumae BGR1 | 2 | 1 |
| Burkholderia xenovorans LB400 | 3 | 1 |
| Burkholderia phymatum STM815 | 2 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| nrdD |
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Burkholderia pseudomallei K96243 Site: position = -37 score = 5.20871 sequence = TCACCAGATTTTGTGC Site: position = -68 score = 3.46136 sequence = ATACAACATCTGGTAT Gene: BPSL2356: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Burkholderia mallei ATCC 23344 Site: position = -80 score = 3.46136 sequence = ATACAACATCTGGTAT Site: position = -49 score = 5.20871 sequence = TCACCAGATTTTGTGC Gene: BMA0629: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| BPSL2357 |
Gene: BPSL2357: hypothetical protein |
Gene: BMA0628: hypothetical protein |
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hypothetical protein |
| nrdG |
Gene: BPSL2358: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: BMA0627: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 2. | |||||||||
| nrdA |
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Burkholderia pseudomallei K96243 Site: position = -340 score = 5.32504 sequence = CCACTATACTTTGGGC Site: position = -309 score = 5.48331 sequence = GCACTACATATAGTGT Gene: BPSL2992: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia mallei ATCC 23344 Site: position = -340 score = 5.32504 sequence = CCACTATACTTTGGGC Site: position = -309 score = 5.48331 sequence = GCACTACATATAGTGT Gene: BMA2510: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia sp. 383 Site: position = -334 score = 5.68538 sequence = CCACTATACTTGGTGC Site: position = -303 score = 5.34313 sequence = GTACTAGATATAGTGT Gene: Bcep18194_A3679: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia cepacia AMMD Site: position = -306 score = 5.34313 sequence = GTACTAGATATAGTGT Site: position = -337 score = 5.68538 sequence = CCACTATACTTGGTGC Gene: Bamb_0497: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia vietnamiensis G4 Site: position = -303 score = 5.34313 sequence = GTACTAGATATAGTGT Site: position = -334 score = 5.68538 sequence = CCACTATACTTGGTGC Gene: Bcep1808_0570: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia glumae BGR1 Site: position = -317 score = 5.68538 sequence = CCACTATACTTGGTGC Site: position = -286 score = 5.48331 sequence = TCACTAGATATAGTGT Gene: bglu_1g04960: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia xenovorans LB400 Site: position = -404 score = 5.68538 sequence = CCACTATACTTGGTGC Site: position = -373 score = 5.15005 sequence = GCACTACATCTTGTGT Gene: Bxe_A0521: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Burkholderia phymatum STM815 Site: position = -351 score = 5.14215 sequence = ACACTATACTTCGTGC Site: position = -320 score = 4.91308 sequence = GCACAAGATGTAGTGT Gene: Bphy_2639: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| Bxe_A0522 |
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Gene: Bxe_A0522: hypothetical protein |
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hypothetical protein |
| nrdB |
Gene: BPSL2991: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BMA2509: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bcep18194_A3680: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bamb_0498: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bcep1808_0571: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: bglu_1g04970: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bxe_A0523: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Bphy_2638: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |