Regulog NrdR - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By trascription factor - NrdR
By taxonomy - Burkholderia
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243	5	2
Burkholderia mallei ATCC 23344	5	2
Burkholderia sp. 383	2	1
Burkholderia cepacia AMMD	2	1
Burkholderia vietnamiensis G4	2	1
Burkholderia glumae BGR1	2	1
Burkholderia xenovorans LB400	3	1
Burkholderia phymatum STM815	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
nrdD	* Burkholderia pseudomallei K96243 Site: position = -37 score = 5.20871 sequence = TCACCAGATTTTGTGC Site: position = -68 score = 3.46136 sequence = ATACAACATCTGGTAT Gene: BPSL2356: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	* Burkholderia mallei ATCC 23344 Site: position = -80 score = 3.46136 sequence = ATACAACATCTGGTAT Site: position = -49 score = 5.20871 sequence = TCACCAGATTTTGTGC Gene: BMA0629: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
BPSL2357	Burkholderia pseudomallei K96243 Gene: BPSL2357: hypothetical protein	Burkholderia mallei ATCC 23344 Gene: BMA0628: hypothetical protein	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	hypothetical protein
nrdG	Burkholderia pseudomallei K96243 Gene: BPSL2358: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Burkholderia mallei ATCC 23344 Gene: BMA0627: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

CRON 2.
nrdA	* Burkholderia pseudomallei K96243 Site: position = -340 score = 5.32504 sequence = CCACTATACTTTGGGC Site: position = -309 score = 5.48331 sequence = GCACTACATATAGTGT Gene: BPSL2992: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia mallei ATCC 23344 Site: position = -340 score = 5.32504 sequence = CCACTATACTTTGGGC Site: position = -309 score = 5.48331 sequence = GCACTACATATAGTGT Gene: BMA2510: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia sp. 383 Site: position = -334 score = 5.68538 sequence = CCACTATACTTGGTGC Site: position = -303 score = 5.34313 sequence = GTACTAGATATAGTGT Gene: Bcep18194_A3679: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia cepacia AMMD Site: position = -306 score = 5.34313 sequence = GTACTAGATATAGTGT Site: position = -337 score = 5.68538 sequence = CCACTATACTTGGTGC Gene: Bamb_0497: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia vietnamiensis G4 Site: position = -303 score = 5.34313 sequence = GTACTAGATATAGTGT Site: position = -334 score = 5.68538 sequence = CCACTATACTTGGTGC Gene: Bcep1808_0570: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia glumae BGR1 Site: position = -317 score = 5.68538 sequence = CCACTATACTTGGTGC Site: position = -286 score = 5.48331 sequence = TCACTAGATATAGTGT Gene: bglu_1g04960: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia xenovorans LB400 Site: position = -404 score = 5.68538 sequence = CCACTATACTTGGTGC Site: position = -373 score = 5.15005 sequence = GCACTACATCTTGTGT Gene: Bxe_A0521: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Burkholderia phymatum STM815 Site: position = -351 score = 5.14215 sequence = ACACTATACTTCGTGC Site: position = -320 score = 4.91308 sequence = GCACAAGATGTAGTGT Gene: Bphy_2639: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Bxe_A0522	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_A0522: hypothetical protein	Burkholderia phymatum STM815	hypothetical protein
nrdB	Burkholderia pseudomallei K96243 Gene: BPSL2991: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia mallei ATCC 23344 Gene: BMA2509: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia sp. 383 Gene: Bcep18194_A3680: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia cepacia AMMD Gene: Bamb_0498: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia vietnamiensis G4 Gene: Bcep1808_0571: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia glumae BGR1 Gene: bglu_1g04970: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia xenovorans LB400 Gene: Bxe_A0523: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Burkholderia phymatum STM815 Gene: Bphy_2638: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --