Regulog NrdR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 3 | 1 |
| Alteromonas macleodii 'Deep ecotype' | 5 | 2 |
| Glaciecola sp. HTCC2999 | 3 | 1 |
| Colwellia psychrerythraea 34H | 5 | 2 |
| Alteromonadales bacterium TW-7 | 3 | 1 |
| Pseudoalteromonas haloplanktis TAC125 | 3 | 1 |
| Pseudoalteromonas tunicata D2 | 3 | 1 |
| Idiomarina baltica OS145 | 3 | 1 |
| Idiomarina loihiensis L2TR | 5 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nrdG |
|
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Alteromonas macleodii 'Deep ecotype' Site: position = -62 score = 4.78473 sequence = ACACAACATATAGTTA Site: position = -94 score = 4.98171 sequence = ATACAACATATAGTGT Gene: MADE_03883: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Colwellia psychrerythraea 34H Site: position = -51 score = 5.29175 sequence = ATACTATATATTGTGC Site: position = -125 score = 5.617 sequence = ACACTATATATTGTGC Gene: CPS_0093: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Idiomarina loihiensis L2TR Site: position = -19 score = 3.95884 sequence = TAACAATATATGGTGT Site: position = -50 score = 4.85841 sequence = GCACAATATGTAGTGA Gene: IL0187: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| nrdD |
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Gene: MADE_03882: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Gene: CPS_0092: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Gene: IL0188: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| CRON 2. | ||||||||||
| nrdA |
*
Pseudoalteromonas atlantica T6c Site: position = -145 score = 4.96306 sequence = CCTCATTATCTTGTGT Site: position = -344 score = 5.24173 sequence = ACACTATATATCGTGA Gene: Patl_2473: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -313 score = 5.10832 sequence = CCTCACTATCTTGTGT Site: position = -345 score = 4.87598 sequence = CCACCAGATATTGGGT Gene: MADE_02125: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Glaciecola sp. HTCC2999 Site: position = -188 score = 5.24341 sequence = CCACATTATCTTGTGC Site: position = -221 score = 4.85371 sequence = ACACATCATCTAGTGG Gene: GHTCC_010100006642: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Colwellia psychrerythraea 34H Site: position = -158 score = 5.10152 sequence = ACCCTAGATATTGTGC Site: position = -189 score = 5.10832 sequence = CCTCACTATCTTGTGT Gene: CPS_2328: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Alteromonadales bacterium TW-7 Site: position = -172 score = 5.45762 sequence = CCACACTATCTTGTGA Site: position = -141 score = 5.34912 sequence = ACACCAGATATTGTGG Gene: ATW7_07067: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -141 score = 5.34912 sequence = ACACCAGATATTGTGG Site: position = -172 score = 5.45762 sequence = CCACACTATCTTGTGA Gene: PSHAa1418: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Pseudoalteromonas tunicata D2 Site: position = -116 score = 5.0911 sequence = CCCCTATATATAGTGT Site: position = -147 score = 5.39999 sequence = CCACTCTATCTTGTGA Gene: PTD2_19892: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Idiomarina baltica OS145 Site: position = -96 score = 5.21216 sequence = CTACTAGATATTGTGT Site: position = -55 score = 5.65972 sequence = ACACAATATCTTGTGG Gene: OS145_00325: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Idiomarina loihiensis L2TR Site: position = -54 score = 5.37459 sequence = GCACAATATCTTGTGG Site: position = -95 score = 5.57387 sequence = ACACTAGATATTGTGT Gene: IL1363: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: Patl_2474: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: MADE_02126: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: GHTCC_010100006637: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CPS_2327: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: ATW7_07072: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PSHAa1417: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PTD2_19897: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: OS145_00330: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: IL1364: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| yfaE |
Gene: Patl_2475: Ferredoxin |
Gene: MADE_02127: Ferredoxin |
Gene: GHTCC_010100006632: Ferredoxin |
Gene: CPS_2326: Ferredoxin |
Gene: ATW7_07077: Ferredoxin |
Gene: PSHAa1416: Ferredoxin |
Gene: PTD2_19902: Ferredoxin |
Gene: OS145_00335: Ferredoxin |
Gene: IL1365: Ferredoxin |
Ferredoxin |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |