Regulog NrdR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	NrdR
Regulation mode:	repressor
Biological process:	Deoxyribonucleotide biosynthesis
Effector:	Deoxyribonucleotides
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 24 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - NrdR
By TF family - NrdR
By effector - Deoxyribonucleotides
By pathway - Deoxyribonucleotide biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	3	1
Alteromonas macleodii 'Deep ecotype'	5	2
Glaciecola sp. HTCC2999	3	1
Colwellia psychrerythraea 34H	5	2
Alteromonadales bacterium TW-7	3	1
Pseudoalteromonas haloplanktis TAC125	3	1
Pseudoalteromonas tunicata D2	3	1
Idiomarina baltica OS145	3	1
Idiomarina loihiensis L2TR	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
nrdG	Pseudoalteromonas atlantica T6c	* Alteromonas macleodii 'Deep ecotype' Site: position = -62 score = 4.78473 sequence = ACACAACATATAGTTA Site: position = -94 score = 4.98171 sequence = ATACAACATATAGTGT Gene: MADE_03883: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -51 score = 5.29175 sequence = ATACTATATATTGTGC Site: position = -125 score = 5.617 sequence = ACACTATATATTGTGC Gene: CPS_0093: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	* Idiomarina loihiensis L2TR Site: position = -19 score = 3.95884 sequence = TAACAATATATGGTGT Site: position = -50 score = 4.85841 sequence = GCACAATATGTAGTGA Gene: IL0187: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03882: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_0092: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR Gene: IL0188: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)

CRON 2.
nrdA	* Pseudoalteromonas atlantica T6c Site: position = -145 score = 4.96306 sequence = CCTCATTATCTTGTGT Site: position = -344 score = 5.24173 sequence = ACACTATATATCGTGA Gene: Patl_2473: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Alteromonas macleodii 'Deep ecotype' Site: position = -313 score = 5.10832 sequence = CCTCACTATCTTGTGT Site: position = -345 score = 4.87598 sequence = CCACCAGATATTGGGT Gene: MADE_02125: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Glaciecola sp. HTCC2999 Site: position = -188 score = 5.24341 sequence = CCACATTATCTTGTGC Site: position = -221 score = 4.85371 sequence = ACACATCATCTAGTGG Gene: GHTCC_010100006642: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Colwellia psychrerythraea 34H Site: position = -158 score = 5.10152 sequence = ACCCTAGATATTGTGC Site: position = -189 score = 5.10832 sequence = CCTCACTATCTTGTGT Gene: CPS_2328: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Alteromonadales bacterium TW-7 Site: position = -172 score = 5.45762 sequence = CCACACTATCTTGTGA Site: position = -141 score = 5.34912 sequence = ACACCAGATATTGTGG Gene: ATW7_07067: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -141 score = 5.34912 sequence = ACACCAGATATTGTGG Site: position = -172 score = 5.45762 sequence = CCACACTATCTTGTGA Gene: PSHAa1418: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Pseudoalteromonas tunicata D2 Site: position = -116 score = 5.0911 sequence = CCCCTATATATAGTGT Site: position = -147 score = 5.39999 sequence = CCACTCTATCTTGTGA Gene: PTD2_19892: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Idiomarina baltica OS145 Site: position = -96 score = 5.21216 sequence = CTACTAGATATTGTGT Site: position = -55 score = 5.65972 sequence = ACACAATATCTTGTGG Gene: OS145_00325: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	* Idiomarina loihiensis L2TR Site: position = -54 score = 5.37459 sequence = GCACAATATCTTGTGG Site: position = -95 score = 5.57387 sequence = ACACTAGATATTGTGT Gene: IL1363: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB	Pseudoalteromonas atlantica T6c Gene: Patl_2474: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02126: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006637: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Colwellia psychrerythraea 34H Gene: CPS_2327: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Alteromonadales bacterium TW-7 Gene: ATW7_07072: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1417: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Pseudoalteromonas tunicata D2 Gene: PTD2_19897: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Idiomarina baltica OS145 Gene: OS145_00330: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Idiomarina loihiensis L2TR Gene: IL1364: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE	Pseudoalteromonas atlantica T6c Gene: Patl_2475: Ferredoxin	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02127: Ferredoxin	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006632: Ferredoxin	Colwellia psychrerythraea 34H Gene: CPS_2326: Ferredoxin	Alteromonadales bacterium TW-7 Gene: ATW7_07077: Ferredoxin	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1416: Ferredoxin	Pseudoalteromonas tunicata D2 Gene: PTD2_19902: Ferredoxin	Idiomarina baltica OS145 Gene: OS145_00335: Ferredoxin	Idiomarina loihiensis L2TR Gene: IL1365: Ferredoxin	Ferredoxin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrdR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --