Regulog NrtR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | repressor |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NrtR
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 4 | 1 |
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | 3 | 2 |
| Polaromonas naphthalenivorans CJ2 | 5 | 2 |
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 5 | 2 |
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| nrtR |
Gene: Aave_4021: Nudix-like transcriptional regulator NrtR |
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Gene: CtesDRAFT_4597: Nudix-like transcriptional regulator NrtR |
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Delftia acidovorans SPH-1 Site: position = -74 score = 5.67001 sequence = TAAGTTGTTCTGTACAACTCG Site: position = -51 score = 5.98898 sequence = TGGGTTGCATAGTGCAACTTA Gene: Daci_5757: Nudix-like transcriptional regulator NrtR |
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Polaromonas naphthalenivorans CJ2 Site: position = -104 score = 5.90084 sequence = TAGGTTGTACTGAACAACCTT Site: position = -79 score = 5.77867 sequence = TGGGTTGCATAATACAACCTT Gene: Pnap_3721: Nudix-like transcriptional regulator NrtR |
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Variovorax paradoxus S110 Site: position = -41 score = 6.04416 sequence = AGAGTTGTTCTGTACAACCCA Gene: Vapar_6281: Nudix-like transcriptional regulator NrtR |
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Nudix-like transcriptional regulator NrtR |
| CRON 2. | ||||||||||||
| pncA |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -63 score = 5.08347 sequence = TTAGTTGCACAAATAAACTAA Gene: Aave_0977: Nicotinamidase (EC 3.5.1.19) |
Gene: Ajs_0702: Nicotinamidase (EC 3.5.1.19) |
Gene: CtesDRAFT_4596: Nicotinamidase (EC 3.5.1.19) |
Gene: Daci_5605: Nicotinamidase (EC 3.5.1.19) |
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Polaromonas naphthalenivorans CJ2 Site: position = -48 score = 6.20948 sequence = AAGGTTGTTCAGTACAACCTA Site: position = -73 score = 5.74469 sequence = AAGGTTGTATTATGCAACCCA Gene: Pnap_3720: Nicotinamidase (EC 3.5.1.19) |
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Gene: Rfer_0828: Nicotinamidase (EC 3.5.1.19) |
*2
Variovorax paradoxus S110 Gene: Vapar_0187: Nicotinamidase (EC 3.5.1.19) Site: position = -61 score = 6.04671 sequence = ATGGTTGTACAGTGCAACCAA Site: position = -38 score = 6.17231 sequence = AGAGTTGCACAGTACAACTAA Gene: Vapar_6282: Nicotinamidase (EC 3.5.1.19) |
Gene: Veis_0861: Nicotinamidase (EC 3.5.1.19) |
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Nicotinamidase (EC 3.5.1.19) |
| pncB |
Gene: Aave_0976: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
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Gene: CtesDRAFT_4581: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: Daci_5606: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: Pnap_3719: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
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Gene: Vapar_6283: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
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Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
| nadE |
Gene: Aave_0975: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase |
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Gene: CtesDRAFT_4580: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase |
Gene: Daci_5607: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase |
Gene: Pnap_3718: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase |
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Gene: Vapar_6284: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase |
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NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase |
| nadM |
Gene: Aave_0974: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: Ajs_0701: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: CtesDRAFT_4579: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: Daci_5608: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: Pnap_3717: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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Gene: Vapar_6285: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
| nrtX |
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Delftia acidovorans SPH-1 Site: position = -58 score = 5.78196 sequence = TAAGTTGCACTATGCAACCCA Site: position = -35 score = 5.95447 sequence = CGAGTTGTACAGAACAACTTA Gene: Daci_5758: NrtR-regulated hypothetical OrfX, Band 7 protein domain |
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NrtR-regulated hypothetical OrfX, Band 7 protein domain |
| nrtY |
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Gene: Daci_5759: NrtR-regulated hypothetical OrfY, PpnK-type ATP-NAD kinase domain |
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NrtR-regulated hypothetical OrfY, PpnK-type ATP-NAD kinase domain |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |