Regulog NrtR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | repressor |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - NrtR
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 7 | 4 |
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | 5 | 2 |
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | ||
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | ||
| Reinekea sp. MED297 | ||
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| nrtR |
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Hahella chejuensis KCTC 2396 Site: position = -41 score = 5.98504 sequence = TTAGTGGCCTAATGCCACTAA Gene: HCH_06996: Nudix-related transcriptional regulator NrtR |
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Marinobacter sp. ELB17 Site: position = -73 score = 4.71508 sequence = TGTGTCAATTGATTTGACAGA Site: position = -116 score = 4.51655 sequence = TTAGTCAATTCATTTGACGGT Gene: MELB17_12281: Nudix-related transcriptional regulator NrtR |
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Nudix-related transcriptional regulator NrtR |
| CRON 2. | |||||||||||||
| nrtX |
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Hahella chejuensis KCTC 2396 Site: position = -46 score = 5.61695 sequence = TTGGTGGCTTTGAGCCACTAT Gene: HCH_04328: NrtR-regulated hypothetical OrfX, Band 7 protein domain |
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NrtR-regulated hypothetical OrfX, Band 7 protein domain |
| nrtY |
Gene: HCH_04327: NrtR-regulated hypothetical OrfY, PpnK-type ATP-NAD kinase domain |
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NrtR-regulated hypothetical OrfY, PpnK-type ATP-NAD kinase domain |
| CRON 3. | |||||||||||||
| nadM |
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Hahella chejuensis KCTC 2396 Site: position = -126 score = 6.04466 sequence = TTAGTGTCATTATGCCACTAT Gene: HCH_06993: Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) |
| nadV |
Gene: HCH_06992: Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) |
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Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) |
| CRON 4. | |||||||||||||
| pnuC |
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Hahella chejuensis KCTC 2396 Site: position = -103 score = 6.17106 sequence = TTAGTGGCATTAGGCCACTAA Gene: HCH_06995: Ribosyl nicotinamide transporter, PnuC-like |
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Ribosyl nicotinamide transporter, PnuC-like |
| nadR |
Gene: HCH_06994: Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) |
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Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) |
| CRON 5. | |||||||||||||
| pncB |
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Marinobacter sp. ELB17 Site: position = -75 score = 4.71508 sequence = TCTGTCAAATCAATTGACACA Gene: MELB17_12286: Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) |
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Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) |
| nadE |
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Gene: MELB17_12291: NAD synthetase (EC 6.3.1.5) |
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Gene: MED92_18213: NAD synthetase (EC 6.3.1.5) |
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Gene: MED297_04869: NAD synthetase (EC 6.3.1.5) |
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NAD synthetase (EC 6.3.1.5) |
| pncA |
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Gene: MELB17_12296: Nicotinamidase (EC 3.5.1.19) |
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Gene: Csal_2870: Nicotinamidase (EC 3.5.1.19) |
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Nicotinamidase (EC 3.5.1.19) |
| nadD |
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Gene: MELB17_12301: Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family |
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Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) ## bacterial NadD family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |