Regulog BirA - Desulfuromonadales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfuromonadales
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Geobacter metallireducens GS-15 | 6 | 2 |
| Geobacter sulfurreducens PCA | 6 | 2 |
| Geobacter uraniumreducens Rf4 | 6 | 2 |
| Geobacter sp. FRC-32 | 6 | 2 |
| Geobacter sp. M21 | 6 | 2 |
| Geobacter lovleyi SZ | 5 | 2 |
| Pelobacter propionicus DSM 2379 | 3 | 1 |
| Pelobacter carbinolicus str. DSM 2380 | 7 | 2 |
| Desulfuromonas acetoxidans DSM 684 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| bioB |
*
Geobacter metallireducens GS-15 Site: position = -75 score = 7.93146 sequence = TTGTTAACC-(14)-AGTTGACAA Gene: Gmet_1582: Biotin synthase (EC 2.8.1.6) |
*
Geobacter sulfurreducens PCA Site: position = -79 score = 8.59468 sequence = TTGTCAACC-(14)-AGTTGACAA Gene: GSU1584: Biotin synthase (EC 2.8.1.6) |
*
Geobacter uraniumreducens Rf4 Site: position = -74 score = 8.3816 sequence = TCGTCAACC-(14)-GGTTGACAA Gene: Gura_2242: Biotin synthase (EC 2.8.1.6) |
*
Geobacter sp. FRC-32 Site: position = -74 score = 8.3816 sequence = TCGTCAACC-(14)-GGTTGACAA Gene: Geob_3008: Biotin synthase (EC 2.8.1.6) |
*
Geobacter sp. M21 Site: position = -72 score = 8.3816 sequence = TCGTCAACC-(14)-GGTTGACAA Gene: GM21_2164: Biotin synthase (EC 2.8.1.6) |
*
Geobacter lovleyi SZ Site: position = -63 score = 9.02294 sequence = TTGTCAACC-(15)-GGTTGACAA Gene: Glov_2370: Biotin synthase (EC 2.8.1.6) |
Gene: Ppro_1175: Biotin synthase (EC 2.8.1.6) |
*
Pelobacter carbinolicus str. DSM 2380 Site: position = -137 score = 8.40466 sequence = TTGTCAACC-(14)-TGTTGACAA Gene: Pcar_1458: Biotin synthase (EC 2.8.1.6) |
|
Biotin synthase (EC 2.8.1.6) |
| bioD |
Gene: Gmet_1581: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: GSU1583: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Gura_2243: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Geob_3009: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: GM21_2165: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Glov_2369: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Ppro_1176: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Pcar_1459: Dethiobiotin synthetase (EC 6.3.3.3) |
|
Dethiobiotin synthetase (EC 6.3.3.3) |
| bioA |
Gene: Gmet_1580: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: GSU1582: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Gura_2244: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Geob_3010: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: GM21_2166: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Glov_2247: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Ppro_1177: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Pcar_1460: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
|
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| CRON 2. | ||||||||||
| bioW |
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|
*
Pelobacter carbinolicus str. DSM 2380 Site: position = -62 score = 8.22649 sequence = ATGTCAACC-(14)-TGTTGACAA Gene: Pcar_1666: Pimeloyl-CoA synthase (EC 6.2.1.14) |
|
Pimeloyl-CoA synthase (EC 6.2.1.14) |
| bioF |
*
Geobacter metallireducens GS-15 Site: position = -65 score = 8.3816 sequence = TTGTCAACC-(14)-GGTTGACGA Gene: Gmet_0842: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Geobacter sulfurreducens PCA Site: position = -87 score = 8.3816 sequence = TTGTCAACC-(14)-GGTTGACGA Gene: GSU2629: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Geobacter uraniumreducens Rf4 Site: position = -94 score = 7.71838 sequence = TTGTTAACC-(14)-GGTTGACGA Gene: Gura_3246: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Geobacter sp. FRC-32 Site: position = -90 score = 7.07703 sequence = TCGTTAACC-(14)-GGTTGACGA Gene: Geob_2084: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Geobacter sp. M21 Site: position = -102 score = 8.3816 sequence = TTGTCAACC-(14)-GGTTGACGA Gene: GM21_3430: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Geobacter lovleyi SZ Site: position = -32 score = 7.93146 sequence = TTGTCAACT-(15)-GGTTAACAA Gene: Glov_1662: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Pelobacter propionicus DSM 2379 Site: position = -42 score = 7.95333 sequence = TTGTCAACT-(14)-GGTTGACCA Gene: Ppro_2093: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Pcar_1665: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
|
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioH |
Gene: Gmet_0843: Biotin synthesis protein bioH |
Gene: GSU2628: Biotin synthesis protein bioH |
Gene: Gura_3245: Biotin synthesis protein bioH |
Gene: Geob_2085: Biotin synthesis protein bioH |
Gene: GM21_3429: Biotin synthesis protein bioH |
Gene: Glov_1663: Biotin synthesis protein bioH |
Gene: Ppro_2092: Biotin synthesis protein bioH |
Gene: Pcar_1664: Biotin synthesis protein bioH |
|
Biotin synthesis protein bioH |
| bioC |
Gene: Gmet_0844: Biotin synthesis protein bioC |
Gene: GSU2627: Biotin synthesis protein bioC |
Gene: Gura_3244: Biotin synthesis protein bioC |
Gene: Geob_2086: Biotin synthesis protein bioC |
Gene: GM21_3428: Biotin synthesis protein bioC |
Gene: Glov_1664: Biotin synthesis protein bioC |
Gene: Ppro_2091: Biotin synthesis protein bioC |
Gene: Pcar_1663: Biotin synthesis protein bioC |
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Biotin synthesis protein bioC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |