Regulog BirA - Xanthomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	BirA
Regulation mode:	repressor
Biological process:	Biotin biosynthesis
Effector:	Biotin
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Xanthomonadales
By trascription factor - BirA
By TF family - BirA
By effector - Biotin
By pathway - Biotin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306	7	2
Xanthomonas campestris pv. campestris str. ATCC 33913	5	2
Stenotrophomonas maltophilia K279a	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
COG1040	Xylella fastidiosa 9a5c Gene: XF0063: competence protein F	* Xanthomonas axonopodis pv. citri str. 306 Site: position = 16 score = 8.41861 sequence = CTGTCAACT-(16)-GGTTTACAG Gene: XAC0389: competence protein F	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = 16 score = 8.41861 sequence = CTGTCAACT-(16)-GGTTTACAG Gene: XCC0389: competence protein F	Stenotrophomonas maltophilia K279a Gene: Smlt4454: competence protein F	competence protein F

CRON 2.
bioB	Xylella fastidiosa 9a5c Gene: XF0064: Biotin synthase (EC 2.8.1.6)	* Xanthomonas axonopodis pv. citri str. 306 Site: position = -93 score = 8.41861 sequence = CTGTAAACC-(16)-AGTTGACAG Gene: XAC0388: Biotin synthase (EC 2.8.1.6)	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -93 score = 8.41861 sequence = CTGTAAACC-(16)-AGTTGACAG Gene: XCC0388: Biotin synthase (EC 2.8.1.6)	* Stenotrophomonas maltophilia K279a Site: position = -91 score = 8.20553 sequence = CCGTAAACC-(16)-GGTTGACAG Gene: Smlt4459: Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)
bioF	Xylella fastidiosa 9a5c Gene: XF1357: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0387: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC0387: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Stenotrophomonas maltophilia K279a Gene: Smlt4460: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)
XAC0386	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0386: hypothetical protein	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC0386: hypothetical protein	Stenotrophomonas maltophilia K279a	hypothetical protein
bioH	Xylella fastidiosa 9a5c Gene: XF1356: Biotin synthesis protein bioH	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0385: Biotin synthesis protein bioH	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC0385: Biotin synthesis protein bioH	Stenotrophomonas maltophilia K279a Gene: Smlt4461: Biotin synthesis protein bioH	Biotin synthesis protein bioH
XAC0384	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0384: putative short chain dehydrogenase	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC0384: putative short chain dehydrogenase	Stenotrophomonas maltophilia K279a Gene: Smlt4462: putative short chain dehydrogenase	putative short chain dehydrogenase
bioC	Xylella fastidiosa 9a5c Gene: XF2099: Biotin synthesis protein bioC	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0383: Biotin synthesis protein bioC	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC0383: Biotin synthesis protein bioC	Stenotrophomonas maltophilia K279a Gene: Smlt4463: Biotin synthesis protein bioC	Biotin synthesis protein bioC

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BirA - Xanthomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --