Regulog BirA - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | ||
| Xanthomonas axonopodis pv. citri str. 306 | 7 | 2 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 5 | 2 |
| Stenotrophomonas maltophilia K279a | 5 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| COG1040 |
Gene: XF0063: competence protein F |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = 16 score = 8.41861 sequence = CTGTCAACT-(16)-GGTTTACAG Gene: XAC0389: competence protein F |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = 16 score = 8.41861 sequence = CTGTCAACT-(16)-GGTTTACAG Gene: XCC0389: competence protein F |
Gene: Smlt4454: competence protein F |
competence protein F |
| CRON 2. | |||||
| bioB |
Gene: XF0064: Biotin synthase (EC 2.8.1.6) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -93 score = 8.41861 sequence = CTGTAAACC-(16)-AGTTGACAG Gene: XAC0388: Biotin synthase (EC 2.8.1.6) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -93 score = 8.41861 sequence = CTGTAAACC-(16)-AGTTGACAG Gene: XCC0388: Biotin synthase (EC 2.8.1.6) |
*
Stenotrophomonas maltophilia K279a Site: position = -91 score = 8.20553 sequence = CCGTAAACC-(16)-GGTTGACAG Gene: Smlt4459: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: XF1357: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: XAC0387: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: XCC0387: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Smlt4460: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| XAC0386 |
|
Gene: XAC0386: hypothetical protein |
Gene: XCC0386: hypothetical protein |
|
hypothetical protein |
| bioH |
Gene: XF1356: Biotin synthesis protein bioH |
Gene: XAC0385: Biotin synthesis protein bioH |
Gene: XCC0385: Biotin synthesis protein bioH |
Gene: Smlt4461: Biotin synthesis protein bioH |
Biotin synthesis protein bioH |
| XAC0384 |
|
Gene: XAC0384: putative short chain dehydrogenase |
Gene: XCC0384: putative short chain dehydrogenase |
Gene: Smlt4462: putative short chain dehydrogenase |
putative short chain dehydrogenase |
| bioC |
Gene: XF2099: Biotin synthesis protein bioC |
Gene: XAC0383: Biotin synthesis protein bioC |
Gene: XCC0383: Biotin synthesis protein bioC |
Gene: Smlt4463: Biotin synthesis protein bioC |
Biotin synthesis protein bioC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |