Regulog BirA - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 5 | 2 |
| Psychromonas sp. CNPT3 | 5 | 2 |
| Moritella sp. PE36 | 5 | 2 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 5 | 2 |
| Aeromonas salmonicida subsp. salmonicida A449 | 5 | 2 |
| Tolumonas auensis DSM 9187 | 5 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| bioA |
*
Psychromonas ingrahamii 37 Site: position = -52 score = 7.10328 sequence = CTGTCAACT-(14)-TCTTTACAT Gene: Ping_1925: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Psychromonas sp. CNPT3 Site: position = -43 score = 7.47147 sequence = CTGTCAACT-(14)-ACTTTACAA Gene: PCNPT3_07370: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Moritella sp. PE36 Site: position = -32 score = 8.31454 sequence = AGGTCAACC-(15)-GGTTTACAA Gene: PE36_13022: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = 145 score = 7.17034 sequence = cTGTcAACa-(16)-aaTTgACAA Gene: AHA_1488: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -45 score = 7.17034 sequence = CTGTCAACA-(16)-AATTGACAA Gene: ASA_2878: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Tolumonas auensis DSM 9187 Site: position = -44 score = 6.86908 sequence = CTGTCAATC-(15)-TATTTACAT Gene: Tola_1096: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| CRON 2. | |||||||
| bioB |
*
Psychromonas ingrahamii 37 Site: position = -249 score = 7.10328 sequence = ATGTAAAGA-(14)-AGTTGACAG Gene: Ping_1924: Biotin synthase (EC 2.8.1.6) |
*
Psychromonas sp. CNPT3 Site: position = -97 score = 7.47147 sequence = TTGTAAAGT-(14)-AGTTGACAG Gene: PCNPT3_07375: Biotin synthase (EC 2.8.1.6) |
*
Moritella sp. PE36 Site: position = -92 score = 8.31454 sequence = TTGTAAACC-(15)-GGTTGACCT Gene: PE36_13017: Biotin synthase (EC 2.8.1.6) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -180 score = 7.17034 sequence = TTGTCAATT-(16)-TGTTGACAG Gene: AHA_1489: Biotin synthase (EC 2.8.1.6) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -181 score = 7.17034 sequence = TTGTCAATT-(16)-TGTTGACAG Gene: ASA_2877: Biotin synthase (EC 2.8.1.6) |
*
Tolumonas auensis DSM 9187 Site: position = -90 score = 6.86908 sequence = ATGTAAATA-(15)-GATTGACAG Gene: Tola_1097: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: Ping_1923: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PCNPT3_07380: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PE36_13012: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: AHA_1490: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: ASA_2876: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Tola_1098: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioC |
Gene: Ping_1922: Biotin synthesis protein bioC |
Gene: PCNPT3_07385: Biotin synthesis protein bioC |
Gene: PE36_13007: Biotin synthesis protein bioC |
Gene: AHA_1491: Biotin synthesis protein bioC |
Gene: ASA_2875: Biotin synthesis protein bioC |
Gene: Tola_1099: Biotin synthesis protein bioC |
Biotin synthesis protein bioC |
| bioD |
Gene: Ping_1921: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PCNPT3_07390: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PE36_13002: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: AHA_1492: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: ASA_2874: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Tola_1100: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |