Regulog NsrR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NsrR
- By taxonomy - Rhodobacterales
- By TF family - Rrf2
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | ||
| Paracoccus denitrificans PD1222 | 5 | 4 |
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | 2 | 2 |
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | 11 | 4 |
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | 12 | 3 |
| Roseobacter sp. MED193 | ||
| Hyphomonas neptunium ATCC 15444 | 3 | 2 |
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| hmp |
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Paracoccus denitrificans PD1222 Site: position = -71 score = 4.73051 sequence = GATGTATCCAGAATACATG Gene: Pden_1689: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| Pden_1688 |
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Gene: Pden_1688: hypothetical protein |
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Gene: HNE_1549: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||||||
| nsrR2 |
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Paracoccus denitrificans PD1222 Site: position = -73 score = 4.73051 sequence = CATGTATTCTGGATACATC Gene: Pden_1690: Nitrite-sensitive transcriptional repressor NsrR |
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Nitrite-sensitive transcriptional repressor NsrR |
| CRON 3. | ||||||||||||||||
| PF01812 |
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Gene: Pden_4790: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
Gene: Jann_3386: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
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Gene: OG2516_11011: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
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Oceanicola batsensis HTCC2597 Gene: OB2597_05320: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) Gene: OB2597_08274: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
Gene: ISM_00195: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
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Roseovarius sp. 217 Site: position = -94 score = 6.35552 sequence = TCGGTATTTACAATACCTA Gene: ROS217_14296: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
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Gene: HNE_2602: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
Gene: OA2633_07539: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) |
| nnrS |
Gene: RSP_0328: NnrS protein involved in response to NO |
Gene: Pden_4230: NnrS protein involved in response to NO |
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Gene: RB2654_12759: NnrS protein involved in response to NO |
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Gene: ROS217_14301: NnrS protein involved in response to NO |
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Gene: HNE_1556: NnrS protein involved in response to NO |
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NnrS protein involved in response to NO |
| nnrU |
Gene: RSP_0318: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
Gene: Pden_2334: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: RB2654_12804: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: ROS217_14306: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: SPO1134: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: HNE_1547: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
| CRON 4. | ||||||||||||||||
| SPOA0185 |
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Silicibacter pomeroyi DSS-3 Site: position = -34 score = 6.38319 sequence = TAGGTATTTAAAATACCTA Gene: SPOA0185: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
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Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
| SPOA0184 |
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Gene: SPOA0184: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
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Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
| SPOA0183 |
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Gene: SPOA0183: Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone |
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Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone |
| SPOA0182 |
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Gene: SPOA0182: hypothetical cytochrome oxidase associated membrane protein |
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hypothetical cytochrome oxidase associated membrane protein |
| SPOA0181 |
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Gene: SPOA0181: Formate/nitrite family of transporters |
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Formate/nitrite family of transporters |
| CRON 5. | ||||||||||||||||
| PF01152 |
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Oceanicola batsensis HTCC2597 Site: position = -131 score = 5.91313 sequence = TAAGTATTTCCAATACCTA Gene: OB2597_05190: Truncated hemoglobin |
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Roseovarius sp. 217 Site: position = -33 score = 6.35552 sequence = TAGGTATTTACAATACCGA Gene: ROS217_02150: Truncated hemoglobin |
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Hyphomonas neptunium ATCC 15444 Site: position = -113 score = 6.35552 sequence = TCGGTATTTACAATACCTA Gene: HNE_1540: Truncated hemoglobin |
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Truncated hemoglobin |
| dnrN |
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Paracoccus denitrificans PD1222 Site: position = -131 score = 6.14426 sequence = TTGGTATTGACAATACCGA Site: position = -96 score = 5.42129 sequence = TCGGTATTGCAAGTACCGA Gene: Pden_3025: Nitric oxide-dependent regulator DnrN or NorA |
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Gene: ROS217_02145: Nitric oxide-dependent regulator DnrN or NorA |
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Gene: HNE_1539: Nitric oxide-dependent regulator DnrN or NorA |
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Nitric oxide-dependent regulator DnrN or NorA |
| CRON 6. | ||||||||||||||||
| SPOA0192 |
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Silicibacter pomeroyi DSS-3 Site: position = -65 score = 5.23819 sequence = TAGGACTTGAAAATACCTA Gene: SPOA0192: truncated hemoglobin |
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hypothetical protein |
| ROS217_02185 |
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Gene: SPOA0191: membrane protein |
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hypothetical protein |
| ccoN |
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Gene: OB2597_20571: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
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Gene: ROS217_02160: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
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Gene: SPOA0190: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
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Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
| ccoO |
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Gene: OB2597_20576: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) |
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Gene: ROS217_02165: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) |
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Gene: SPOA0189: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) |
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Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) |
| ccoQ |
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Gene: OB2597_20581: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) |
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Gene: ccoQ: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) |
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Gene: SPOA0188: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) |
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Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) |
| ccoP |
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Gene: OB2597_20586: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) |
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Gene: ROS217_02175: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) |
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Gene: SPOA0187: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) |
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Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) |
| nsrR |
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Paracoccus denitrificans PD1222 Site: position = -66 score = 5.42129 sequence = TCGGTACTTGCAATACCGA Site: position = -31 score = 6.14426 sequence = TCGGTATTGTCAATACCAA Gene: Pden_3024: Nitrite-sensitive transcriptional repressor NsrR |
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Oceanicola batsensis HTCC2597 Site: position = -38 score = 5.91313 sequence = TAGGTATTGGAAATACTTA Gene: OB2597_05195: Nitrite-sensitive transcriptional repressor NsrR |
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Roseovarius sp. 217 Site: position = -41 score = 6.35552 sequence = TAGGTATTGTAAATACCGA Gene: ROS217_14291: Nitrite-sensitive transcriptional repressor NsrR Site: position = -41 score = 6.35552 sequence = TCGGTATTGTAAATACCTA Gene: ROS217_02155: Nitrite-sensitive transcriptional repressor NsrR |
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Silicibacter pomeroyi DSS-3 Site: position = -90 score = 6.38319 sequence = TAGGTATTTTAAATACCTA Gene: SPOA0186: Nitrite-sensitive transcriptional repressor NsrR |
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Hyphomonas neptunium ATCC 15444 Site: position = -40 score = 6.35552 sequence = TAGGTATTGTAAATACCGA Gene: HNE_1541: Nitrite-sensitive transcriptional repressor NsrR |
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Nitrite-sensitive transcriptional repressor NsrR |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |