Regulog NsrR2 - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - NsrR
- By TF family - Rrf2
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | ||
| Thauera sp. MZ1T | 3 | 2 |
| Dechloromonas aromatica RCB | ||
| Nitrosomonas europaea ATCC 19718 | 5 | 2 |
| Nitrosospira multiformis ATCC 25196 | ||
| Thiobacillus denitrificans | 1 | 1 |
| Chromobacterium violaceum ATCC 12472 | 7 | 4 |
| Neisseria meningitidis MC58 | ||
| Laribacter hongkongensis HLHK9 | ||
| Methylobacillus flagellatus KT | 1 | 1 |
| Methylotenera mobilis JLW8 | 2 | 2 |
| Methylophilales bacterium HTCC2181 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| Tmz1t_0413 |
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Thauera sp. MZ1T Site: position = -46 score = 5.75833 sequence = GATGCATTTAATATGTATC Gene: Tmz1t_0413: Hemerythrin HHE cation binding domain protein |
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Gene: NMB0438: Hemerythrin HHE cation binding domain protein |
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Hemerythrin HHE cation binding domain protein |
| fdxA |
Gene: ebB155: 4Fe-4S ferredoxin, iron-sulfur binding |
Gene: Tmz1t_0414: 4Fe-4S ferredoxin, iron-sulfur binding |
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Gene: LHK_00641: 4Fe-4S ferredoxin, iron-sulfur binding |
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4Fe-4S ferredoxin, iron-sulfur binding |
| CRON 2. | |||||||||||||
| hmp |
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Thiobacillus denitrificans Site: position = -48 score = 5.68654 sequence = CATGCATACGGTATGCATG Gene: Tbd_2329: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Chromobacterium violaceum ATCC 12472 Site: position = -32 score = 3.4874 sequence = GATGTATTTTTTAAATATC Site: position = -96 score = 2.68385 sequence = CATGTATTATTTGAACATC Gene: CV3488: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Methylobacillus flagellatus KT Site: position = -32 score = 4.23781 sequence = GTTTCCTATTAAATACAAC Gene: Mfla_0639: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Methylotenera mobilis JLW8 Site: position = -36 score = 5.54928 sequence = GTAGCATTTTAAATGCAAC Gene: Mmol_1063: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| nsrR |
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Thauera sp. MZ1T Site: position = -93 score = 5.75833 sequence = GATACATATTAAATGCATC Gene: Tmz1t_0412: Nitrite-sensitive transcriptional repressor NsrR |
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Nitrosomonas europaea ATCC 19718 Site: position = -218 score = 4.02575 sequence = GGTGTATATTAGATACATC Site: position = -125 score = 3.13051 sequence = GATATATTATTAATATATC Gene: NE0928: Nitrite-sensitive transcriptional repressor NsrR |
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Gene: Tbd_2014: Nitrite-sensitive transcriptional repressor NsrR |
Gene: CV3487: Nitrite-sensitive transcriptional repressor NsrR |
Gene: NMB0437: Nitrite-sensitive transcriptional repressor NsrR |
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Gene: Mfla_0640: Nitrite-sensitive transcriptional repressor NsrR |
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Methylotenera mobilis JLW8 Site: position = -41 score = 5.96981 sequence = GTTGCATATTAAATGCAAC Gene: Mmol_1062: Nitrite-sensitive transcriptional repressor NsrR |
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Nitrite-sensitive transcriptional repressor NsrR |
| CRON 3. | |||||||||||||
| nirK |
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*2
Nitrosomonas europaea ATCC 19718 Gene: NE0924: Copper-containing nitrite reductase (EC 1.7.2.1) Site: position = -94 score = 3.13051 sequence = GATATATTAATAATATATC Site: position = -1 score = 4.02575 sequence = GATGTATCTAATATACACC Gene: NE0927: Copper-containing nitrite reductase (EC 1.7.2.1) |
Gene: Nmul_A1998: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Chromobacterium violaceum ATCC 12472 Site: position = -74 score = 3.92294 sequence = CATGTATTAATTATGCATT Gene: CV2007: Copper-containing nitrite reductase (EC 1.7.2.1) |
Gene: NMB1623: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Gene: Mmol_1061: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Copper-containing nitrite reductase (EC 1.7.2.1) |
| NE0926 |
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Gene: NE0926: Cytochrome c, class I |
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Cytochrome c, class I |
| cccA |
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Gene: NE0925: Cytochrome c, class I |
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Cytochrome c, class I |
| PF03781 |
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Gene: CV2008: Probable signal peptide protein |
Gene: NMB1624: Probable signal peptide protein |
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Gene: Mmol_1060: Probable signal peptide protein |
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Probable signal peptide protein |
| PF02630 |
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Gene: CV2009: Copper chaperone, SCO1/SenC family protein |
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Gene: Mmol_1059: Copper chaperone, SCO1/SenC family protein |
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Copper chaperone, SCO1/SenC family protein |
| CRON 4. | |||||||||||||
| norB |
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Chromobacterium violaceum ATCC 12472 Site: position = -85 score = 3.34322 sequence = GATGTGCAATATATACATC Site: position = -59 score = 4.60123 sequence = GATGCATGTATTCTGCATC Gene: CV3494: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
| CRON 5. | |||||||||||||
| nasA |
Gene: ebA1213: Nitrate/nitrite transporter |
Gene: Tmz1t_1145: Nitrate/nitrite transporter |
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Chromobacterium violaceum ATCC 12472 Site: position = -31 score = 5.48016 sequence = CATGCAAACCATATGCATG Gene: CV2228: Nitrate/nitrite transporter |
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Gene: Mmol_1651: Nitrate/nitrite transporter |
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Nitrate/nitrite transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |