Statistics of regulated genes

Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	3	2
Acidovorax sp. JS42	3	3
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Polaromonas naphthalenivorans CJ2	7	5
Polaromonas sp. JS666	1	1
Rhodoferax ferrireducens DSM 15236	3	3
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes												Function
CRON 1.
PF10006	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	*2 Polaromonas naphthalenivorans CJ2 Site: position = -62 score = 5.30265 sequence = GGTGTATTATAAATGCATC Site: position = -51 score = 4.52321 sequence = AATGCATCTTTTAAGCACC Gene: Pnap_3969: hypothetical protein Gene: Pnap_1329: hypothetical protein	*2 Polaromonas sp. JS666 Gene: Bpro_4723: hypothetical protein Site: position = -58 score = 4.81276 sequence = GGTGCATCTCAAATACACC Gene: Bpro_4720: hypothetical protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	hypothetical protein
nnrS	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2159: NnrS protein involved in response to NO	* Acidovorax sp. JS42 Site: position = -49 score = 4.15393 sequence = TATTCATGTAAAATGAATC Gene: Ajs_2847: NnrS protein involved in response to NO	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3970: NnrS protein involved in response to NO	Polaromonas sp. JS666 Gene: Bpro_4727: NnrS protein involved in response to NO	* Rhodoferax ferrireducens DSM 15236 Site: position = -54 score = 5.41559 sequence = GATGCATATAAAATGTACT Gene: Rfer_1884: NnrS protein involved in response to NO	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_1475: NnrS protein involved in response to NO	NnrS protein involved in response to NO
norB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Polaromonas naphthalenivorans CJ2 Site: position = -104 score = 4.7139 sequence = AATGTATTTTATTGGCATG Gene: Pnap_1328: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1886: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent
nsrR	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -66 score = 5.23884 sequence = GATGAATATTTTATGCAAT Gene: Aave_1572: Nitrite-sensitive transcriptional repressor NsrR	* Acidovorax sp. JS42 Site: position = -64 score = 5.39009 sequence = GATGAATATTTTATTCATT Gene: Ajs_3163: Nitrite-sensitive transcriptional repressor NsrR	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Polaromonas naphthalenivorans CJ2 Site: position = -128 score = 4.7139 sequence = CATGCCAATAAAATACATT Gene: Pnap_1327: Nitrite-sensitive transcriptional repressor NsrR	Polaromonas sp. JS666 Gene: Bpro_4724: Nitrite-sensitive transcriptional repressor NsrR	* Rhodoferax ferrireducens DSM 15236 Site: position = -70 score = 5.41559 sequence = AGTACATTTTATATGCATC Gene: Rfer_1883: Nitrite-sensitive transcriptional repressor NsrR	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Nitrite-sensitive transcriptional repressor NsrR
CRON 2.
dnrN	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -44 score = 5.23884 sequence = ATTGCATAAAATATTCATC Gene: Aave_1571: Nitric oxide-dependent regulator DnrN or NorA	* Acidovorax sp. JS42 Site: position = -44 score = 5.39009 sequence = AATGAATAAAATATTCATC Gene: Ajs_3164: Nitric oxide-dependent regulator DnrN or NorA	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Nitric oxide-dependent regulator DnrN or NorA
PF01152	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_1570: Truncated hemoglobin	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Polaromonas naphthalenivorans CJ2 Site: position = -78 score = 5.28336 sequence = GATTCATTTAAAATACATC Gene: Pnap_1025: Truncated hemoglobin	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -76 score = 4.93925 sequence = GATGCATCTTATATCTATT Gene: Rfer_4128: Truncated hemoglobin	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Truncated hemoglobin
CRON 3.
nirK	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Polaromonas naphthalenivorans CJ2 Site: position = -155 score = 4.98319 sequence = CATGCATTTAATATGTACA Gene: Pnap_1326: nitrite reductase, copper-containing	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	nitrite reductase, copper-containing

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