Regulog NsrR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NsrR
- By TF family - Rrf2
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 3 | 2 |
| Acidovorax sp. JS42 | 3 | 3 |
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Polaromonas naphthalenivorans CJ2 | 7 | 5 |
| Polaromonas sp. JS666 | 1 | 1 |
| Rhodoferax ferrireducens DSM 15236 | 3 | 3 |
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| PF10006 |
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*2
Polaromonas naphthalenivorans CJ2 Site: position = -62 score = 5.30265 sequence = GGTGTATTATAAATGCATC Site: position = -51 score = 4.52321 sequence = AATGCATCTTTTAAGCACC Gene: Pnap_3969: hypothetical protein Gene: Pnap_1329: hypothetical protein |
*2
Polaromonas sp. JS666 Gene: Bpro_4723: hypothetical protein Site: position = -58 score = 4.81276 sequence = GGTGCATCTCAAATACACC Gene: Bpro_4720: hypothetical protein |
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hypothetical protein |
| nnrS |
Gene: Aave_2159: NnrS protein involved in response to NO |
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Acidovorax sp. JS42 Site: position = -49 score = 4.15393 sequence = TATTCATGTAAAATGAATC Gene: Ajs_2847: NnrS protein involved in response to NO |
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Gene: Pnap_3970: NnrS protein involved in response to NO |
Gene: Bpro_4727: NnrS protein involved in response to NO |
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Rhodoferax ferrireducens DSM 15236 Site: position = -54 score = 5.41559 sequence = GATGCATATAAAATGTACT Gene: Rfer_1884: NnrS protein involved in response to NO |
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Gene: Lcho_1475: NnrS protein involved in response to NO |
NnrS protein involved in response to NO |
| norB |
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Polaromonas naphthalenivorans CJ2 Site: position = -104 score = 4.7139 sequence = AATGTATTTTATTGGCATG Gene: Pnap_1328: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Gene: Rfer_1886: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
| nsrR |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -66 score = 5.23884 sequence = GATGAATATTTTATGCAAT Gene: Aave_1572: Nitrite-sensitive transcriptional repressor NsrR |
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Acidovorax sp. JS42 Site: position = -64 score = 5.39009 sequence = GATGAATATTTTATTCATT Gene: Ajs_3163: Nitrite-sensitive transcriptional repressor NsrR |
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Polaromonas naphthalenivorans CJ2 Site: position = -128 score = 4.7139 sequence = CATGCCAATAAAATACATT Gene: Pnap_1327: Nitrite-sensitive transcriptional repressor NsrR |
Gene: Bpro_4724: Nitrite-sensitive transcriptional repressor NsrR |
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Rhodoferax ferrireducens DSM 15236 Site: position = -70 score = 5.41559 sequence = AGTACATTTTATATGCATC Gene: Rfer_1883: Nitrite-sensitive transcriptional repressor NsrR |
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Nitrite-sensitive transcriptional repressor NsrR |
| CRON 2. | ||||||||||||
| dnrN |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -44 score = 5.23884 sequence = ATTGCATAAAATATTCATC Gene: Aave_1571: Nitric oxide-dependent regulator DnrN or NorA |
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Acidovorax sp. JS42 Site: position = -44 score = 5.39009 sequence = AATGAATAAAATATTCATC Gene: Ajs_3164: Nitric oxide-dependent regulator DnrN or NorA |
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Nitric oxide-dependent regulator DnrN or NorA |
| PF01152 |
Gene: Aave_1570: Truncated hemoglobin |
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Polaromonas naphthalenivorans CJ2 Site: position = -78 score = 5.28336 sequence = GATTCATTTAAAATACATC Gene: Pnap_1025: Truncated hemoglobin |
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Rhodoferax ferrireducens DSM 15236 Site: position = -76 score = 4.93925 sequence = GATGCATCTTATATCTATT Gene: Rfer_4128: Truncated hemoglobin |
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Truncated hemoglobin |
| CRON 3. | ||||||||||||
| nirK |
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Polaromonas naphthalenivorans CJ2 Site: position = -155 score = 4.98319 sequence = CATGCATTTAATATGTACA Gene: Pnap_1326: nitrite reductase, copper-containing |
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nitrite reductase, copper-containing |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |